Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28846 | 5' | -62 | NC_006146.1 | + | 38155 | 0.69 | 0.479332 |
Target: 5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3' miRNA: 3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 135961 | 0.69 | 0.470275 |
Target: 5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3' miRNA: 3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 32131 | 0.69 | 0.470275 |
Target: 5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3' miRNA: 3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 55821 | 0.69 | 0.470275 |
Target: 5'- uACAgCCAGCGCCuGGGUGGGCa--- -3' miRNA: 3'- uUGUaGGUCGCGGcCCCGUCCGcugc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 68228 | 0.69 | 0.470275 |
Target: 5'- uACGUCCGGCacagCGGGGgAGGCG-CGg -3' miRNA: 3'- uUGUAGGUCGcg--GCCCCgUCCGCuGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 125087 | 0.69 | 0.470275 |
Target: 5'- -uCAUCCAGacuaugguguCGCCGGGGUcGGCGGu- -3' miRNA: 3'- uuGUAGGUC----------GCGGCCCCGuCCGCUgc -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 99148 | 0.69 | 0.45243 |
Target: 5'- gGGC-UCCAGCGaCC--GGCAGGUGGCGg -3' miRNA: 3'- -UUGuAGGUCGC-GGccCCGUCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 51213 | 0.7 | 0.43496 |
Target: 5'- gGGCAUCCAcGagGCCGGGGUggcGGGUGAgGu -3' miRNA: 3'- -UUGUAGGU-Cg-CGGCCCCG---UCCGCUgC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 170092 | 0.7 | 0.417887 |
Target: 5'- cGGCGggaggggCCGGCGCCGcaGGGgGGGcCGGCGg -3' miRNA: 3'- -UUGUa------GGUCGCGGC--CCCgUCC-GCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 64230 | 0.7 | 0.417887 |
Target: 5'- cACAUCUgcgccuGgGCCGGGGCGGGaggGGCGu -3' miRNA: 3'- uUGUAGGu-----CgCGGCCCCGUCCg--CUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 169974 | 0.7 | 0.393059 |
Target: 5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3' miRNA: 3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 48621 | 0.7 | 0.393059 |
Target: 5'- -uCGUCgGGUGCCgugGGGGCGGGCuccgGGCGg -3' miRNA: 3'- uuGUAGgUCGCGG---CCCCGUCCG----CUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 167178 | 0.7 | 0.393059 |
Target: 5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3' miRNA: 3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 168110 | 0.7 | 0.393059 |
Target: 5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3' miRNA: 3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 169042 | 0.7 | 0.393059 |
Target: 5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3' miRNA: 3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 167416 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 168348 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 170211 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 169280 | 0.7 | 0.392248 |
Target: 5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3' miRNA: 3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' |
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28846 | 5' | -62 | NC_006146.1 | + | 115538 | 0.71 | 0.384998 |
Target: 5'- gGGCGUCCcGCGCgCGGuGGCgggggcuggAGGCGACc -3' miRNA: 3'- -UUGUAGGuCGCG-GCC-CCG---------UCCGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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