miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 2352 0.68 0.535314
Target:  5'- cAACGUCCuGCgcaaguacgaGCCGGGaCAGGCGuccGCGg -3'
miRNA:   3'- -UUGUAGGuCG----------CGGCCCcGUCCGC---UGC- -5'
28846 5' -62 NC_006146.1 + 4665 0.66 0.672074
Target:  5'- -cCGUCCuGgGCCGgguGGGCgAGGCGGgGg -3'
miRNA:   3'- uuGUAGGuCgCGGC---CCCG-UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 10734 0.68 0.525808
Target:  5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3'
miRNA:   3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5'
28846 5' -62 NC_006146.1 + 12441 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 14100 0.66 0.652443
Target:  5'- --aGUCCccagGGCgggauGUCGGGGCugcuGGCGGCGg -3'
miRNA:   3'- uugUAGG----UCG-----CGGCCCCGu---CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 15520 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 17426 0.66 0.672074
Target:  5'- -cCAUUguGCGCCgucgacGGaGGCAGGCGGa- -3'
miRNA:   3'- uuGUAGguCGCGG------CC-CCGUCCGCUgc -5'
28846 5' -62 NC_006146.1 + 18598 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 21024 0.68 0.525808
Target:  5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3'
miRNA:   3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5'
28846 5' -62 NC_006146.1 + 21676 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 24754 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 25848 0.74 0.259337
Target:  5'- uACAUCCAGCGCCaGGGCuGcGCGcucACGc -3'
miRNA:   3'- uUGUAGGUCGCGGcCCCGuC-CGC---UGC- -5'
28846 5' -62 NC_006146.1 + 27832 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 28030 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 28222 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 32131 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 32139 0.67 0.573882
Target:  5'- uAGCAgguuagCCAGgGCCGuGGCAGGCcGCu -3'
miRNA:   3'- -UUGUa-----GGUCgCGGCcCCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 34011 0.68 0.516367
Target:  5'- aGGCAgggggGGgGUCGGGGCAGGCgGGCGu -3'
miRNA:   3'- -UUGUagg--UCgCGGCCCCGUCCG-CUGC- -5'
28846 5' -62 NC_006146.1 + 38155 0.69 0.479332
Target:  5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3'
miRNA:   3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5'
28846 5' -62 NC_006146.1 + 40878 0.66 0.649492
Target:  5'- --gGUCCGGagacggaGCCGGGGCcucgucugcgauccGGGCG-CGa -3'
miRNA:   3'- uugUAGGUCg------CGGCCCCG--------------UCCGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.