miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 42363 0.69 0.479332
Target:  5'- gGAUcUCCcGCGCCGccaGGGUGGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGGC---CCCGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 42760 0.68 0.544879
Target:  5'- cGGCAg-CAGgGCCGacaGGuGCAGGCGGCGc -3'
miRNA:   3'- -UUGUagGUCgCGGC---CC-CGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 44504 0.67 0.603228
Target:  5'- cGACccCgGGCGuCCGGGGUuucAGGCuGACGg -3'
miRNA:   3'- -UUGuaGgUCGC-GGCCCCG---UCCG-CUGC- -5'
28846 5' -62 NC_006146.1 + 44542 0.71 0.353113
Target:  5'- gGAUAUCCuggaaaaGGgGCCGGGGCuccGGGUGGCu -3'
miRNA:   3'- -UUGUAGG-------UCgCGGCCCCG---UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 48051 0.71 0.369209
Target:  5'- -uCGUCCAGCGCCccGGGCAGcGUG-CGg -3'
miRNA:   3'- uuGUAGGUCGCGGc-CCCGUC-CGCuGC- -5'
28846 5' -62 NC_006146.1 + 48621 0.7 0.393059
Target:  5'- -uCGUCgGGUGCCgugGGGGCGGGCuccgGGCGg -3'
miRNA:   3'- uuGUAGgUCGCGG---CCCCGUCCG----CUGC- -5'
28846 5' -62 NC_006146.1 + 50011 0.66 0.641617
Target:  5'- aGGCgAUCCGGUugaugcaGCCGGGGUcgAGGCG-Ca -3'
miRNA:   3'- -UUG-UAGGUCG-------CGGCCCCG--UCCGCuGc -5'
28846 5' -62 NC_006146.1 + 51213 0.7 0.43496
Target:  5'- gGGCAUCCAcGagGCCGGGGUggcGGGUGAgGu -3'
miRNA:   3'- -UUGUAGGU-Cg-CGGCCCCG---UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 51821 0.68 0.506994
Target:  5'- cGGCcUCCucgggaAGCGCCGGaGGUGGGCuGCGg -3'
miRNA:   3'- -UUGuAGG------UCGCGGCC-CCGUCCGcUGC- -5'
28846 5' -62 NC_006146.1 + 52331 0.67 0.593418
Target:  5'- ----aCguGgGCCGGGGUgcccgGGGCGGCGu -3'
miRNA:   3'- uuguaGguCgCGGCCCCG-----UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 52694 0.66 0.622902
Target:  5'- -uCGUCCAGCuCCGGGcgggagguCAGGgGGCGg -3'
miRNA:   3'- uuGUAGGUCGcGGCCCc-------GUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 53115 0.71 0.369209
Target:  5'- aGGCGgcCCGGC-CCGGGGgAGcGCGACGg -3'
miRNA:   3'- -UUGUa-GGUCGcGGCCCCgUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 53737 0.74 0.259337
Target:  5'- gAGCcgCgGcuGCGCCGGGGCgaagacGGGCGGCGg -3'
miRNA:   3'- -UUGuaGgU--CGCGGCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55044 0.68 0.553535
Target:  5'- ----gUCGGgGCCGGGGCcugccacAGGCGGCc -3'
miRNA:   3'- uuguaGGUCgCGGCCCCG-------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 55181 0.68 0.544879
Target:  5'- cGCGUCCcaGGCugcgGCCGcGGCGGGCGAgCGu -3'
miRNA:   3'- uUGUAGG--UCG----CGGCcCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 55651 0.67 0.603228
Target:  5'- aGGgGUgCAGCaGCCGGaGcCAGGCGGCGu -3'
miRNA:   3'- -UUgUAgGUCG-CGGCCcC-GUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55821 0.69 0.470275
Target:  5'- uACAgCCAGCGCCuGGGUGGGCa--- -3'
miRNA:   3'- uUGUaGGUCGCGGcCCCGUCCGcugc -5'
28846 5' -62 NC_006146.1 + 56231 0.68 0.544879
Target:  5'- -cCGUCCAGCggguccGCgGGGGCggAGGCGGgGc -3'
miRNA:   3'- uuGUAGGUCG------CGgCCCCG--UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 56292 0.68 0.525808
Target:  5'- gGACGUCCAGCGCCGccucgAGGUGGCc -3'
miRNA:   3'- -UUGUAGGUCGCGGCcccg-UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 56857 0.67 0.583634
Target:  5'- gGGCGg-CAGCuuugGCUGGGGCuGGCGGCc -3'
miRNA:   3'- -UUGUagGUCG----CGGCCCCGuCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.