miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 170508 0.66 0.622902
Target:  5'- gGACccCCAGCGCgcggcgggCGGGGCcugAGGgGGCGc -3'
miRNA:   3'- -UUGuaGGUCGCG--------GCCCCG---UCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 170211 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 170092 0.7 0.417887
Target:  5'- cGGCGggaggggCCGGCGCCGcaGGGgGGGcCGGCGg -3'
miRNA:   3'- -UUGUa------GGUCGCGGC--CCCgUCC-GCUGC- -5'
28846 5' -62 NC_006146.1 + 169974 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 169280 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 169160 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 169042 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 168348 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 168228 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 168110 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 167416 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 167296 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 167178 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 165376 0.67 0.583634
Target:  5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3'
miRNA:   3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 162851 0.66 0.622902
Target:  5'- aGACAcccCCAGgGCCGGGuccaGCGGGUGccaGCGa -3'
miRNA:   3'- -UUGUa--GGUCgCGGCCC----CGUCCGC---UGC- -5'
28846 5' -62 NC_006146.1 + 161761 0.66 0.672074
Target:  5'- uGAgGUCCgagggGGCGCCuGGGCGGG-GGCc -3'
miRNA:   3'- -UUgUAGG-----UCGCGGcCCCGUCCgCUGc -5'
28846 5' -62 NC_006146.1 + 161734 0.67 0.583634
Target:  5'- gAACccuUgUAGC-CCGGGGguGGCGGCu -3'
miRNA:   3'- -UUGu--AgGUCGcGGCCCCguCCGCUGc -5'
28846 5' -62 NC_006146.1 + 160367 0.68 0.516367
Target:  5'- uGGCGUCuCAGCGCCcuuGGCAGGCcGCc -3'
miRNA:   3'- -UUGUAG-GUCGCGGcc-CCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 156905 0.67 0.593418
Target:  5'- cAGCA-CCAGC-CCGGccgaggccuGGguGGCGGCGc -3'
miRNA:   3'- -UUGUaGGUCGcGGCC---------CCguCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 150710 0.66 0.632752
Target:  5'- cAGCcUCCuGCGCCcccgGGGGCccucugcaaagAGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGG----CCCCG-----------UCCGCUgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.