miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 139963 0.66 0.652443
Target:  5'- -cCGUCUGGCuCauGGGCAGGUGugGg -3'
miRNA:   3'- uuGUAGGUCGcGgcCCCGUCCGCugC- -5'
28846 5' -62 NC_006146.1 + 139705 0.66 0.652443
Target:  5'- aGGCAUCCauGGUGUCGaGGGUGGGCuguGugGu -3'
miRNA:   3'- -UUGUAGG--UCGCGGC-CCCGUCCG---CugC- -5'
28846 5' -62 NC_006146.1 + 139407 0.67 0.583634
Target:  5'- -----aCGGCGCCGGGGgAGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 139362 0.67 0.613059
Target:  5'- -----gCGGCGCCGGGGgGGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 135961 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 125087 0.69 0.470275
Target:  5'- -uCAUCCAGacuaugguguCGCCGGGGUcGGCGGu- -3'
miRNA:   3'- uuGUAGGUC----------GCGGCCCCGuCCGCUgc -5'
28846 5' -62 NC_006146.1 + 124139 0.66 0.622902
Target:  5'- -cCAUCC-GC-CCGGGGUcgggAGGCGAgGa -3'
miRNA:   3'- uuGUAGGuCGcGGCCCCG----UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 123713 0.72 0.310596
Target:  5'- ----cCUGGCGCuCGGGGC-GGCGGCGg -3'
miRNA:   3'- uuguaGGUCGCG-GCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 118052 0.68 0.535314
Target:  5'- gAGCccCCGG-GCgGGGGC-GGCGGCGg -3'
miRNA:   3'- -UUGuaGGUCgCGgCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 116818 0.69 0.497695
Target:  5'- gGGCGUCCAggacguGUGCCGGGaCGcGGCGGCc -3'
miRNA:   3'- -UUGUAGGU------CGCGGCCCcGU-CCGCUGc -5'
28846 5' -62 NC_006146.1 + 115538 0.71 0.384998
Target:  5'- gGGCGUCCcGCGCgCGGuGGCgggggcuggAGGCGACc -3'
miRNA:   3'- -UUGUAGGuCGCG-GCC-CCG---------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 114298 0.67 0.613059
Target:  5'- gGACG-CCGGCGaggagaCCGGcGGCGGGCucGGCGc -3'
miRNA:   3'- -UUGUaGGUCGC------GGCC-CCGUCCG--CUGC- -5'
28846 5' -62 NC_006146.1 + 113695 0.72 0.324559
Target:  5'- cGGCcUCCGGC-CCGGGGaC-GGCGGCGg -3'
miRNA:   3'- -UUGuAGGUCGcGGCCCC-GuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 110874 0.69 0.497695
Target:  5'- uGCGUCUcGgGCuCGGGcGCAGGCGGgGa -3'
miRNA:   3'- uUGUAGGuCgCG-GCCC-CGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 105183 0.71 0.361482
Target:  5'- -cCGUCCAGUGaCCGGGGCcGGgGAg- -3'
miRNA:   3'- uuGUAGGUCGC-GGCCCCGuCCgCUgc -5'
28846 5' -62 NC_006146.1 + 103658 0.66 0.672074
Target:  5'- aGACGU--AGCGCauggcgggcaucUGGGGCGGGCGGuCGa -3'
miRNA:   3'- -UUGUAggUCGCG------------GCCCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 100702 0.75 0.210154
Target:  5'- cGGCAcCCGGCGCUgcgGGGGUGGGUGugGg -3'
miRNA:   3'- -UUGUaGGUCGCGG---CCCCGUCCGCugC- -5'
28846 5' -62 NC_006146.1 + 99148 0.69 0.45243
Target:  5'- gGGC-UCCAGCGaCC--GGCAGGUGGCGg -3'
miRNA:   3'- -UUGuAGGUCGC-GGccCCGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 96445 0.66 0.632752
Target:  5'- -cCAUCguGgGCCaugGGGGCAGG-GACa -3'
miRNA:   3'- uuGUAGguCgCGG---CCCCGUCCgCUGc -5'
28846 5' -62 NC_006146.1 + 93924 0.66 0.666195
Target:  5'- aGGCGUagaaggCGGCGgCGGGGCuccgcucuccgucccAGGCGACc -3'
miRNA:   3'- -UUGUAg-----GUCGCgGCCCCG---------------UCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.