miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 92327 0.66 0.652443
Target:  5'- gGGCGggcCCGGC-CUGGGGCagcugauaugGGGCGGCu -3'
miRNA:   3'- -UUGUa--GGUCGcGGCCCCG----------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 80086 0.67 0.593418
Target:  5'- cAGCA--CAGCGCCuGGGU-GGCGACa -3'
miRNA:   3'- -UUGUagGUCGCGGcCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 77908 0.71 0.384998
Target:  5'- uAACA---GGCGCaGGGGCGGGCGGCc -3'
miRNA:   3'- -UUGUaggUCGCGgCCCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 77824 0.66 0.622902
Target:  5'- gGACAggaCGGCGgaGGGGgGGGCGGgGg -3'
miRNA:   3'- -UUGUag-GUCGCggCCCCgUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 76371 0.68 0.506994
Target:  5'- aGACcgCCAcgagagggcGCGCCGGGGgAGGgaccgggggcgcCGACGg -3'
miRNA:   3'- -UUGuaGGU---------CGCGGCCCCgUCC------------GCUGC- -5'
28846 5' -62 NC_006146.1 + 69612 0.69 0.479332
Target:  5'- aGACGUCCAG-GCCcacguccccGGGGUacuggGGGCGGCu -3'
miRNA:   3'- -UUGUAGGUCgCGG---------CCCCG-----UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 68228 0.69 0.470275
Target:  5'- uACGUCCGGCacagCGGGGgAGGCG-CGg -3'
miRNA:   3'- uUGUAGGUCGcg--GCCCCgUCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 64640 0.66 0.672074
Target:  5'- gGAUGUCUucCGCCGGGGCcAGGgGcACGu -3'
miRNA:   3'- -UUGUAGGucGCGGCCCCG-UCCgC-UGC- -5'
28846 5' -62 NC_006146.1 + 64406 0.69 0.497695
Target:  5'- gAGCGUUgaugUAG-GCCGGGGCcacGGCGGCGu -3'
miRNA:   3'- -UUGUAG----GUCgCGGCCCCGu--CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 64230 0.7 0.417887
Target:  5'- cACAUCUgcgccuGgGCCGGGGCGGGaggGGCGu -3'
miRNA:   3'- uUGUAGGu-----CgCGGCCCCGUCCg--CUGC- -5'
28846 5' -62 NC_006146.1 + 57284 1.06 0.001273
Target:  5'- cAACAUCCAGCGCCGGGGCAGGCGACGg -3'
miRNA:   3'- -UUGUAGGUCGCGGCCCCGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 56857 0.67 0.583634
Target:  5'- gGGCGg-CAGCuuugGCUGGGGCuGGCGGCc -3'
miRNA:   3'- -UUGUagGUCG----CGGCCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 56292 0.68 0.525808
Target:  5'- gGACGUCCAGCGCCGccucgAGGUGGCc -3'
miRNA:   3'- -UUGUAGGUCGCGGCcccg-UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 56231 0.68 0.544879
Target:  5'- -cCGUCCAGCggguccGCgGGGGCggAGGCGGgGc -3'
miRNA:   3'- uuGUAGGUCG------CGgCCCCG--UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 55821 0.69 0.470275
Target:  5'- uACAgCCAGCGCCuGGGUGGGCa--- -3'
miRNA:   3'- uUGUaGGUCGCGGcCCCGUCCGcugc -5'
28846 5' -62 NC_006146.1 + 55651 0.67 0.603228
Target:  5'- aGGgGUgCAGCaGCCGGaGcCAGGCGGCGu -3'
miRNA:   3'- -UUgUAgGUCG-CGGCCcC-GUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55181 0.68 0.544879
Target:  5'- cGCGUCCcaGGCugcgGCCGcGGCGGGCGAgCGu -3'
miRNA:   3'- uUGUAGG--UCG----CGGCcCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 55044 0.68 0.553535
Target:  5'- ----gUCGGgGCCGGGGCcugccacAGGCGGCc -3'
miRNA:   3'- uuguaGGUCgCGGCCCCG-------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 53737 0.74 0.259337
Target:  5'- gAGCcgCgGcuGCGCCGGGGCgaagacGGGCGGCGg -3'
miRNA:   3'- -UUGuaGgU--CGCGGCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 53115 0.71 0.369209
Target:  5'- aGGCGgcCCGGC-CCGGGGgAGcGCGACGg -3'
miRNA:   3'- -UUGUa-GGUCGcGGCCCCgUC-CGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.