miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 53737 0.74 0.259337
Target:  5'- gAGCcgCgGcuGCGCCGGGGCgaagacGGGCGGCGg -3'
miRNA:   3'- -UUGuaGgU--CGCGGCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 64406 0.69 0.497695
Target:  5'- gAGCGUUgaugUAG-GCCGGGGCcacGGCGGCGu -3'
miRNA:   3'- -UUGUAG----GUCgCGGCCCCGu--CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 160367 0.68 0.516367
Target:  5'- uGGCGUCuCAGCGCCcuuGGCAGGCcGCc -3'
miRNA:   3'- -UUGUAG-GUCGCGGcc-CCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 103658 0.66 0.672074
Target:  5'- aGACGU--AGCGCauggcgggcaucUGGGGCGGGCGGuCGa -3'
miRNA:   3'- -UUGUAggUCGCG------------GCCCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 167416 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 168348 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 170211 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 48621 0.7 0.393059
Target:  5'- -uCGUCgGGUGCCgugGGGGCGGGCuccgGGCGg -3'
miRNA:   3'- uuGUAGgUCGCGG---CCCCGUCCG----CUGC- -5'
28846 5' -62 NC_006146.1 + 169042 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 69612 0.69 0.479332
Target:  5'- aGACGUCCAG-GCCcacguccccGGGGUacuggGGGCGGCu -3'
miRNA:   3'- -UUGUAGGUCgCGG---------CCCCG-----UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 170092 0.7 0.417887
Target:  5'- cGGCGggaggggCCGGCGCCGcaGGGgGGGcCGGCGg -3'
miRNA:   3'- -UUGUa------GGUCGCGGC--CCCgUCC-GCUGC- -5'
28846 5' -62 NC_006146.1 + 168110 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 113695 0.72 0.324559
Target:  5'- cGGCcUCCGGC-CCGGGGaC-GGCGGCGg -3'
miRNA:   3'- -UUGuAGGUCGcGGCCCC-GuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 99148 0.69 0.45243
Target:  5'- gGGC-UCCAGCGaCC--GGCAGGUGGCGg -3'
miRNA:   3'- -UUGuAGGUCGC-GGccCCGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 48051 0.71 0.369209
Target:  5'- -uCGUCCAGCGCCccGGGCAGcGUG-CGg -3'
miRNA:   3'- uuGUAGGUCGCGGc-CCCGUC-CGCuGC- -5'
28846 5' -62 NC_006146.1 + 167178 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 125087 0.69 0.470275
Target:  5'- -uCAUCCAGacuaugguguCGCCGGGGUcGGCGGu- -3'
miRNA:   3'- uuGUAGGUC----------GCGGCCCCGuCCGCUgc -5'
28846 5' -62 NC_006146.1 + 34011 0.68 0.516367
Target:  5'- aGGCAgggggGGgGUCGGGGCAGGCgGGCGu -3'
miRNA:   3'- -UUGUagg--UCgCGGCCCCGUCCG-CUGC- -5'
28846 5' -62 NC_006146.1 + 53115 0.71 0.369209
Target:  5'- aGGCGgcCCGGC-CCGGGGgAGcGCGACGg -3'
miRNA:   3'- -UUGUa-GGUCGcGGCCCCgUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 169280 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.