miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 55181 0.68 0.544879
Target:  5'- cGCGUCCcaGGCugcgGCCGcGGCGGGCGAgCGu -3'
miRNA:   3'- uUGUAGG--UCG----CGGCcCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 56292 0.68 0.525808
Target:  5'- gGACGUCCAGCGCCGccucgAGGUGGCc -3'
miRNA:   3'- -UUGUAGGUCGCGGCcccg-UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 169042 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 167416 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 21676 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 52331 0.67 0.593418
Target:  5'- ----aCguGgGCCGGGGUgcccgGGGCGGCGu -3'
miRNA:   3'- uuguaGguCgCGGCCCCG-----UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 34011 0.68 0.516367
Target:  5'- aGGCAgggggGGgGUCGGGGCAGGCgGGCGu -3'
miRNA:   3'- -UUGUagg--UCgCGGCCCCGUCCG-CUGC- -5'
28846 5' -62 NC_006146.1 + 53115 0.71 0.369209
Target:  5'- aGGCGgcCCGGC-CCGGGGgAGcGCGACGg -3'
miRNA:   3'- -UUGUa-GGUCGcGGCCCCgUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 56857 0.67 0.583634
Target:  5'- gGGCGg-CAGCuuugGCUGGGGCuGGCGGCc -3'
miRNA:   3'- -UUGUagGUCG----CGGCCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 48051 0.71 0.369209
Target:  5'- -uCGUCCAGCGCCccGGGCAGcGUG-CGg -3'
miRNA:   3'- uuGUAGGUCGCGGc-CCCGUC-CGCuGC- -5'
28846 5' -62 NC_006146.1 + 160367 0.68 0.516367
Target:  5'- uGGCGUCuCAGCGCCcuuGGCAGGCcGCc -3'
miRNA:   3'- -UUGUAG-GUCGCGGcc-CCGUCCGcUGc -5'
28846 5' -62 NC_006146.1 + 56231 0.68 0.544879
Target:  5'- -cCGUCCAGCggguccGCgGGGGCggAGGCGGgGc -3'
miRNA:   3'- uuGUAGGUCG------CGgCCCCG--UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 125087 0.69 0.470275
Target:  5'- -uCAUCCAGacuaugguguCGCCGGGGUcGGCGGu- -3'
miRNA:   3'- uuGUAGGUC----------GCGGCCCCGuCCGCUgc -5'
28846 5' -62 NC_006146.1 + 169974 0.7 0.393059
Target:  5'- gGACGggaggCCGGCGCgcgccCGGGGUcccgggGGGCGGCGc -3'
miRNA:   3'- -UUGUa----GGUCGCG-----GCCCCG------UCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 48621 0.7 0.393059
Target:  5'- -uCGUCgGGUGCCgugGGGGCGGGCuccgGGCGg -3'
miRNA:   3'- uuGUAGgUCGCGG---CCCCGUCCG----CUGC- -5'
28846 5' -62 NC_006146.1 + 168348 0.7 0.392248
Target:  5'- uGGCGggggCCAGCGCgggguccCGGGGCGGGgGGuCGg -3'
miRNA:   3'- -UUGUa---GGUCGCG-------GCCCCGUCCgCU-GC- -5'
28846 5' -62 NC_006146.1 + 167296 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 24754 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 12441 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 80086 0.67 0.593418
Target:  5'- cAGCA--CAGCGCCuGGGU-GGCGACa -3'
miRNA:   3'- -UUGUagGUCGCGGcCCCGuCCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.