miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 139963 0.66 0.652443
Target:  5'- -cCGUCUGGCuCauGGGCAGGUGugGg -3'
miRNA:   3'- uuGUAGGUCGcGgcCCCGUCCGCugC- -5'
28846 5' -62 NC_006146.1 + 55181 0.68 0.544879
Target:  5'- cGCGUCCcaGGCugcgGCCGcGGCGGGCGAgCGu -3'
miRNA:   3'- uUGUAGG--UCG----CGGCcCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 80086 0.67 0.593418
Target:  5'- cAGCA--CAGCGCCuGGGU-GGCGACa -3'
miRNA:   3'- -UUGUagGUCGCGGcCCCGuCCGCUGc -5'
28846 5' -62 NC_006146.1 + 15520 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 24754 0.67 0.603228
Target:  5'- gGACAcaugagCCAgGCGCCGGGGCcuuucAGGCccuCGg -3'
miRNA:   3'- -UUGUa-----GGU-CGCGGCCCCG-----UCCGcu-GC- -5'
28846 5' -62 NC_006146.1 + 64640 0.66 0.672074
Target:  5'- gGAUGUCUucCGCCGGGGCcAGGgGcACGu -3'
miRNA:   3'- -UUGUAGGucGCGGCCCCG-UCCgC-UGC- -5'
28846 5' -62 NC_006146.1 + 150710 0.66 0.632752
Target:  5'- cAGCcUCCuGCGCCcccgGGGGCccucugcaaagAGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGG----CCCCG-----------UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 96445 0.66 0.632752
Target:  5'- -cCAUCguGgGCCaugGGGGCAGG-GACa -3'
miRNA:   3'- uuGUAGguCgCGG---CCCCGUCCgCUGc -5'
28846 5' -62 NC_006146.1 + 162851 0.66 0.622902
Target:  5'- aGACAcccCCAGgGCCGGGuccaGCGGGUGccaGCGa -3'
miRNA:   3'- -UUGUa--GGUCgCGGCCC----CGUCCGC---UGC- -5'
28846 5' -62 NC_006146.1 + 169160 0.67 0.612075
Target:  5'- cGGCGggaggggCCGGCGCCugcagggGGGGCcGGCGGgGc -3'
miRNA:   3'- -UUGUa------GGUCGCGG-------CCCCGuCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 103658 0.66 0.672074
Target:  5'- aGACGU--AGCGCauggcgggcaucUGGGGCGGGCGGuCGa -3'
miRNA:   3'- -UUGUAggUCGCG------------GCCCCGUCCGCU-GC- -5'
28846 5' -62 NC_006146.1 + 135961 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 68228 0.69 0.470275
Target:  5'- uACGUCCGGCacagCGGGGgAGGCG-CGg -3'
miRNA:   3'- uUGUAGGUCGcg--GCCCCgUCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 32131 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 38155 0.69 0.479332
Target:  5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3'
miRNA:   3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5'
28846 5' -62 NC_006146.1 + 28222 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 51213 0.7 0.43496
Target:  5'- gGGCAUCCAcGagGCCGGGGUggcGGGUGAgGu -3'
miRNA:   3'- -UUGUAGGU-Cg-CGGCCCCG---UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 114298 0.67 0.613059
Target:  5'- gGACG-CCGGCGaggagaCCGGcGGCGGGCucGGCGc -3'
miRNA:   3'- -UUGUaGGUCGC------GGCC-CCGUCCG--CUGC- -5'
28846 5' -62 NC_006146.1 + 165376 0.67 0.583634
Target:  5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3'
miRNA:   3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 139407 0.67 0.583634
Target:  5'- -----aCGGCGCCGGGGgAGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.