miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 40878 0.66 0.649492
Target:  5'- --gGUCCGGagacggaGCCGGGGCcucgucugcgauccGGGCG-CGa -3'
miRNA:   3'- uugUAGGUCg------CGGCCCCG--------------UCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 28222 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 118052 0.68 0.535314
Target:  5'- gAGCccCCGG-GCgGGGGC-GGCGGCGg -3'
miRNA:   3'- -UUGuaGGUCgCGgCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 21024 0.68 0.525808
Target:  5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3'
miRNA:   3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5'
28846 5' -62 NC_006146.1 + 25848 0.74 0.259337
Target:  5'- uACAUCCAGCGCCaGGGCuGcGCGcucACGc -3'
miRNA:   3'- uUGUAGGUCGCGGcCCCGuC-CGC---UGC- -5'
28846 5' -62 NC_006146.1 + 123713 0.72 0.310596
Target:  5'- ----cCUGGCGCuCGGGGC-GGCGGCGg -3'
miRNA:   3'- uuguaGGUCGCG-GCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 44542 0.71 0.353113
Target:  5'- gGAUAUCCuggaaaaGGgGCCGGGGCuccGGGUGGCu -3'
miRNA:   3'- -UUGUAGG-------UCgCGGCCCCG---UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 57284 1.06 0.001273
Target:  5'- cAACAUCCAGCGCCGGGGCAGGCGACGg -3'
miRNA:   3'- -UUGUAGGUCGCGGCCCCGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 55821 0.69 0.470275
Target:  5'- uACAgCCAGCGCCuGGGUGGGCa--- -3'
miRNA:   3'- uUGUaGGUCGCGGcCCCGUCCGcugc -5'
28846 5' -62 NC_006146.1 + 51213 0.7 0.43496
Target:  5'- gGGCAUCCAcGagGCCGGGGUggcGGGUGAgGu -3'
miRNA:   3'- -UUGUAGGU-Cg-CGGCCCCG---UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 32131 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 68228 0.69 0.470275
Target:  5'- uACGUCCGGCacagCGGGGgAGGCG-CGg -3'
miRNA:   3'- uUGUAGGUCGcg--GCCCCgUCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 135961 0.69 0.470275
Target:  5'- cACGUCaccccggGGUGCUGGGGUGGGgGAUGg -3'
miRNA:   3'- uUGUAGg------UCGCGGCCCCGUCCgCUGC- -5'
28846 5' -62 NC_006146.1 + 38155 0.69 0.479332
Target:  5'- cGGCAUCCGGCcccggagaaCCGGGGCuacuGGgGACc -3'
miRNA:   3'- -UUGUAGGUCGc--------GGCCCCGu---CCgCUGc -5'
28846 5' -62 NC_006146.1 + 42363 0.69 0.479332
Target:  5'- gGAUcUCCcGCGCCGccaGGGUGGGCGAgGg -3'
miRNA:   3'- -UUGuAGGuCGCGGC---CCCGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 110874 0.69 0.497695
Target:  5'- uGCGUCUcGgGCuCGGGcGCAGGCGGgGa -3'
miRNA:   3'- uUGUAGGuCgCG-GCCC-CGUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 116818 0.69 0.497695
Target:  5'- gGGCGUCCAggacguGUGCCGGGaCGcGGCGGCc -3'
miRNA:   3'- -UUGUAGGU------CGCGGCCCcGU-CCGCUGc -5'
28846 5' -62 NC_006146.1 + 51821 0.68 0.506994
Target:  5'- cGGCcUCCucgggaAGCGCCGGaGGUGGGCuGCGg -3'
miRNA:   3'- -UUGuAGG------UCGCGGCC-CCGUCCGcUGC- -5'
28846 5' -62 NC_006146.1 + 76371 0.68 0.506994
Target:  5'- aGACcgCCAcgagagggcGCGCCGGGGgAGGgaccgggggcgcCGACGg -3'
miRNA:   3'- -UUGuaGGU---------CGCGGCCCCgUCC------------GCUGC- -5'
28846 5' -62 NC_006146.1 + 10734 0.68 0.525808
Target:  5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3'
miRNA:   3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.