miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28846 5' -62 NC_006146.1 + 76371 0.68 0.506994
Target:  5'- aGACcgCCAcgagagggcGCGCCGGGGgAGGgaccgggggcgcCGACGg -3'
miRNA:   3'- -UUGuaGGU---------CGCGGCCCCgUCC------------GCUGC- -5'
28846 5' -62 NC_006146.1 + 114298 0.67 0.613059
Target:  5'- gGACG-CCGGCGaggagaCCGGcGGCGGGCucGGCGc -3'
miRNA:   3'- -UUGUaGGUCGC------GGCC-CCGUCCG--CUGC- -5'
28846 5' -62 NC_006146.1 + 165376 0.67 0.583634
Target:  5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3'
miRNA:   3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5'
28846 5' -62 NC_006146.1 + 139407 0.67 0.583634
Target:  5'- -----aCGGCGCCGGGGgAGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 161734 0.67 0.583634
Target:  5'- gAACccuUgUAGC-CCGGGGguGGCGGCu -3'
miRNA:   3'- -UUGu--AgGUCGcGGCCCCguCCGCUGc -5'
28846 5' -62 NC_006146.1 + 42760 0.68 0.544879
Target:  5'- cGGCAg-CAGgGCCGacaGGuGCAGGCGGCGc -3'
miRNA:   3'- -UUGUagGUCgCGGC---CC-CGUCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 118052 0.68 0.535314
Target:  5'- gAGCccCCGG-GCgGGGGC-GGCGGCGg -3'
miRNA:   3'- -UUGuaGGUCgCGgCCCCGuCCGCUGC- -5'
28846 5' -62 NC_006146.1 + 21024 0.68 0.525808
Target:  5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3'
miRNA:   3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5'
28846 5' -62 NC_006146.1 + 10734 0.68 0.525808
Target:  5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3'
miRNA:   3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5'
28846 5' -62 NC_006146.1 + 139362 0.67 0.613059
Target:  5'- -----gCGGCGCCGGGGgGGGUGcCu -3'
miRNA:   3'- uuguagGUCGCGGCCCCgUCCGCuGc -5'
28846 5' -62 NC_006146.1 + 124139 0.66 0.622902
Target:  5'- -cCAUCC-GC-CCGGGGUcgggAGGCGAgGa -3'
miRNA:   3'- uuGUAGGuCGcGGCCCCG----UCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 77824 0.66 0.622902
Target:  5'- gGACAggaCGGCGgaGGGGgGGGCGGgGg -3'
miRNA:   3'- -UUGUag-GUCGCggCCCCgUCCGCUgC- -5'
28846 5' -62 NC_006146.1 + 17426 0.66 0.672074
Target:  5'- -cCAUUguGCGCCgucgacGGaGGCAGGCGGa- -3'
miRNA:   3'- uuGUAGguCGCGG------CC-CCGUCCGCUgc -5'
28846 5' -62 NC_006146.1 + 139705 0.66 0.652443
Target:  5'- aGGCAUCCauGGUGUCGaGGGUGGGCuguGugGu -3'
miRNA:   3'- -UUGUAGG--UCGCGGC-CCCGUCCG---CugC- -5'
28846 5' -62 NC_006146.1 + 92327 0.66 0.652443
Target:  5'- gGGCGggcCCGGC-CUGGGGCagcugauaugGGGCGGCu -3'
miRNA:   3'- -UUGUa--GGUCGcGGCCCCG----------UCCGCUGc -5'
28846 5' -62 NC_006146.1 + 14100 0.66 0.652443
Target:  5'- --aGUCCccagGGCgggauGUCGGGGCugcuGGCGGCGg -3'
miRNA:   3'- uugUAGG----UCG-----CGGCCCCGu---CCGCUGC- -5'
28846 5' -62 NC_006146.1 + 40878 0.66 0.649492
Target:  5'- --gGUCCGGagacggaGCCGGGGCcucgucugcgauccGGGCG-CGa -3'
miRNA:   3'- uugUAGGUCg------CGGCCCCG--------------UCCGCuGC- -5'
28846 5' -62 NC_006146.1 + 28222 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 28030 0.66 0.642601
Target:  5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3'
miRNA:   3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5'
28846 5' -62 NC_006146.1 + 50011 0.66 0.641617
Target:  5'- aGGCgAUCCGGUugaugcaGCCGGGGUcgAGGCG-Ca -3'
miRNA:   3'- -UUG-UAGGUCG-------CGGCCCCG--UCCGCuGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.