Results 21 - 40 of 91 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28846 | 5' | -62 | NC_006146.1 | + | 10734 | 0.68 | 0.525808 |
Target: 5'- gGGCAgCCAGagccaGCCGGGGCcauGCGGCu -3' miRNA: 3'- -UUGUaGGUCg----CGGCCCCGuc-CGCUGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 28030 | 0.66 | 0.642601 |
Target: 5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3' miRNA: 3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 28222 | 0.66 | 0.642601 |
Target: 5'- -cCGUCCGacccaGCCGgaGGGCAGGUGGCu -3' miRNA: 3'- uuGUAGGUcg---CGGC--CCCGUCCGCUGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 40878 | 0.66 | 0.649492 |
Target: 5'- --gGUCCGGagacggaGCCGGGGCcucgucugcgauccGGGCG-CGa -3' miRNA: 3'- uugUAGGUCg------CGGCCCCG--------------UCCGCuGC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 14100 | 0.66 | 0.652443 |
Target: 5'- --aGUCCccagGGCgggauGUCGGGGCugcuGGCGGCGg -3' miRNA: 3'- uugUAGG----UCG-----CGGCCCCGu---CCGCUGC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 92327 | 0.66 | 0.652443 |
Target: 5'- gGGCGggcCCGGC-CUGGGGCagcugauaugGGGCGGCu -3' miRNA: 3'- -UUGUa--GGUCGcGGCCCCG----------UCCGCUGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 139705 | 0.66 | 0.652443 |
Target: 5'- aGGCAUCCauGGUGUCGaGGGUGGGCuguGugGu -3' miRNA: 3'- -UUGUAGG--UCGCGGC-CCCGUCCG---CugC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 17426 | 0.66 | 0.672074 |
Target: 5'- -cCAUUguGCGCCgucgacGGaGGCAGGCGGa- -3' miRNA: 3'- uuGUAGguCGCGG------CC-CCGUCCGCUgc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 161761 | 0.66 | 0.672074 |
Target: 5'- uGAgGUCCgagggGGCGCCuGGGCGGG-GGCc -3' miRNA: 3'- -UUgUAGG-----UCGCGGcCCCGUCCgCUGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 50011 | 0.66 | 0.641617 |
Target: 5'- aGGCgAUCCGGUugaugcaGCCGGGGUcgAGGCG-Ca -3' miRNA: 3'- -UUG-UAGGUCG-------CGGCCCCG--UCCGCuGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 77824 | 0.66 | 0.622902 |
Target: 5'- gGACAggaCGGCGgaGGGGgGGGCGGgGg -3' miRNA: 3'- -UUGUag-GUCGCggCCCCgUCCGCUgC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 124139 | 0.66 | 0.622902 |
Target: 5'- -cCAUCC-GC-CCGGGGUcgggAGGCGAgGa -3' miRNA: 3'- uuGUAGGuCGcGGCCCCG----UCCGCUgC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 21024 | 0.68 | 0.525808 |
Target: 5'- -uUAUCgAGUGCCGGGGauucucggaGGGCGAg- -3' miRNA: 3'- uuGUAGgUCGCGGCCCCg--------UCCGCUgc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 118052 | 0.68 | 0.535314 |
Target: 5'- gAGCccCCGG-GCgGGGGC-GGCGGCGg -3' miRNA: 3'- -UUGuaGGUCgCGgCCCCGuCCGCUGC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 42760 | 0.68 | 0.544879 |
Target: 5'- cGGCAg-CAGgGCCGacaGGuGCAGGCGGCGc -3' miRNA: 3'- -UUGUagGUCgCGGC---CC-CGUCCGCUGC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 161734 | 0.67 | 0.583634 |
Target: 5'- gAACccuUgUAGC-CCGGGGguGGCGGCu -3' miRNA: 3'- -UUGu--AgGUCGcGGCCCCguCCGCUGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 139407 | 0.67 | 0.583634 |
Target: 5'- -----aCGGCGCCGGGGgAGGUGcCu -3' miRNA: 3'- uuguagGUCGCGGCCCCgUCCGCuGc -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 165376 | 0.67 | 0.583634 |
Target: 5'- cAGCGU--GGCGCCaGGGGuCAGuGCGAUGa -3' miRNA: 3'- -UUGUAggUCGCGG-CCCC-GUC-CGCUGC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 114298 | 0.67 | 0.613059 |
Target: 5'- gGACG-CCGGCGaggagaCCGGcGGCGGGCucGGCGc -3' miRNA: 3'- -UUGUaGGUCGC------GGCC-CCGUCCG--CUGC- -5' |
|||||||
28846 | 5' | -62 | NC_006146.1 | + | 139362 | 0.67 | 0.613059 |
Target: 5'- -----gCGGCGCCGGGGgGGGUGcCu -3' miRNA: 3'- uuguagGUCGCGGCCCCgUCCGCuGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home