Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 124179 | 0.67 | 0.973178 |
Target: 5'- uGGCCUCcgCCcGCcucgGAGCcGCCGCGGc -3' miRNA: 3'- -UCGGAGuaGGcUGua--CUUG-UGGUGCU- -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 124226 | 0.71 | 0.84869 |
Target: 5'- -uCCUgGUCCGACGUGGAgGCCAaCGc -3' miRNA: 3'- ucGGAgUAGGCUGUACUUgUGGU-GCu -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 124272 | 0.71 | 0.871984 |
Target: 5'- uGCCUCAUCCGgaacgGCcgGGACAUCAacaGGc -3' miRNA: 3'- uCGGAGUAGGC-----UGuaCUUGUGGUg--CU- -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 125082 | 0.68 | 0.948633 |
Target: 5'- cAGCUUCAUCCaGACuAUGGuguCGCCGgGGu -3' miRNA: 3'- -UCGGAGUAGG-CUG-UACUu--GUGGUgCU- -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 125907 | 0.68 | 0.955619 |
Target: 5'- gGGCCUCA-CCGAgcUGGAgagaaggguccggcCACCGCGGu -3' miRNA: 3'- -UCGGAGUaGGCUguACUU--------------GUGGUGCU- -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 131261 | 0.69 | 0.929439 |
Target: 5'- cAGCCUCAUCacgGGCGUGGACuuuuuaCACa- -3' miRNA: 3'- -UCGGAGUAGg--CUGUACUUGug----GUGcu -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 145486 | 0.66 | 0.986262 |
Target: 5'- cGUUUCAggUCCGGCGUGu---CCACGGa -3' miRNA: 3'- uCGGAGU--AGGCUGUACuuguGGUGCU- -5' |
|||||||
28847 | 3' | -52.5 | NC_006146.1 | + | 160713 | 0.67 | 0.967274 |
Target: 5'- cGUCUCGUCCuGgGUGAACACaGCGu -3' miRNA: 3'- uCGGAGUAGGcUgUACUUGUGgUGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home