miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2885 3' -50.8 NC_001493.1 + 33509 0.66 0.990651
Target:  5'- cACCACccacaaggcaguuGgGGUCUUgaagcagCCGUcGUGCACc -3'
miRNA:   3'- -UGGUG-------------UgCCAGAAaaa----GGCA-CACGUG- -5'
2885 3' -50.8 NC_001493.1 + 66980 0.66 0.986335
Target:  5'- aGCCgACGCGGUgaUUUUCgaucauaugcuCGUGaUGCACu -3'
miRNA:   3'- -UGG-UGUGCCAgaAAAAG-----------GCAC-ACGUG- -5'
2885 3' -50.8 NC_001493.1 + 35639 0.66 0.984537
Target:  5'- aACUACucuACGGUCUcg--CCGggGUGUACg -3'
miRNA:   3'- -UGGUG---UGCCAGAaaaaGGCa-CACGUG- -5'
2885 3' -50.8 NC_001493.1 + 47368 0.67 0.980408
Target:  5'- uCCACGCGGUUgcccacaUCCGUGaucGCAg -3'
miRNA:   3'- uGGUGUGCCAGaaaa---AGGCACa--CGUg -5'
2885 3' -50.8 NC_001493.1 + 73622 0.67 0.979492
Target:  5'- gACCAcCGCGGUCcccccugcgCUGcgGUGCACa -3'
miRNA:   3'- -UGGU-GUGCCAGaaaaa----GGCa-CACGUG- -5'
2885 3' -50.8 NC_001493.1 + 85649 0.67 0.978059
Target:  5'- uGCCGCgGCGGUCcca--CCG-GUGUACa -3'
miRNA:   3'- -UGGUG-UGCCAGaaaaaGGCaCACGUG- -5'
2885 3' -50.8 NC_001493.1 + 110463 0.68 0.966563
Target:  5'- gACCcguCACGGUaaaggagagUUUUUUCCGcgGUGCAUu -3'
miRNA:   3'- -UGGu--GUGCCA---------GAAAAAGGCa-CACGUG- -5'
2885 3' -50.8 NC_001493.1 + 73231 0.68 0.963126
Target:  5'- uCUugACGGUCUUUUcggCCGUG-GC-Ca -3'
miRNA:   3'- uGGugUGCCAGAAAAa--GGCACaCGuG- -5'
2885 3' -50.8 NC_001493.1 + 38143 0.68 0.955529
Target:  5'- gACCGCGauCGGgCUUcgUCCGgGUGCAUa -3'
miRNA:   3'- -UGGUGU--GCCaGAAaaAGGCaCACGUG- -5'
2885 3' -50.8 NC_001493.1 + 82064 0.7 0.914912
Target:  5'- gGCCACGCGGUCUUUgaucgCC-UGgcugGcCACg -3'
miRNA:   3'- -UGGUGUGCCAGAAAaa---GGcACa---C-GUG- -5'
2885 3' -50.8 NC_001493.1 + 60075 0.7 0.914298
Target:  5'- uACCACACGGUCUcg-UUCGgagGUgggacggugacgaGCACg -3'
miRNA:   3'- -UGGUGUGCCAGAaaaAGGCa--CA-------------CGUG- -5'
2885 3' -50.8 NC_001493.1 + 57553 0.7 0.908655
Target:  5'- uCCGCACGGUCacgg-CCucGUGCACg -3'
miRNA:   3'- uGGUGUGCCAGaaaaaGGcaCACGUG- -5'
2885 3' -50.8 NC_001493.1 + 43884 0.74 0.756912
Target:  5'- gGCCGCgACGGUCUgaggggCCGUcaccagGUGCGCu -3'
miRNA:   3'- -UGGUG-UGCCAGAaaaa--GGCA------CACGUG- -5'
2885 3' -50.8 NC_001493.1 + 11490 0.97 0.045275
Target:  5'- cACCACACGGUCUUUUU-CGUGUGCACg -3'
miRNA:   3'- -UGGUGUGCCAGAAAAAgGCACACGUG- -5'
2885 3' -50.8 NC_001493.1 + 127045 1.11 0.005803
Target:  5'- cACCACACGGUCUUUUUCCGUGUGCACg -3'
miRNA:   3'- -UGGUGUGCCAGAAAAAGGCACACGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.