miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 3' -65.4 NC_006146.1 + 118057 0.68 0.414519
Target:  5'- -cCCGGGcgggGGCGGCggcggCUCGGCCcUCc -3'
miRNA:   3'- uuGGCCCa---CCGCCGa----GGGCCGGcAGu -5'
28853 3' -65.4 NC_006146.1 + 137228 0.68 0.414519
Target:  5'- aAGCCGGGUGGgGGCcuggggUCCCGGggaCCa--- -3'
miRNA:   3'- -UUGGCCCACCgCCG------AGGGCC---GGcagu -5'
28853 3' -65.4 NC_006146.1 + 296 0.68 0.406385
Target:  5'- -cCCGGG-GGCGGg-CCCGGCgCGcUCGc -3'
miRNA:   3'- uuGGCCCaCCGCCgaGGGCCG-GC-AGU- -5'
28853 3' -65.4 NC_006146.1 + 92170 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 33353 0.68 0.406385
Target:  5'- cAGCCGGGUGGCcgccGGUggguccgCCgGGCCGc-- -3'
miRNA:   3'- -UUGGCCCACCG----CCGa------GGgCCGGCagu -5'
28853 3' -65.4 NC_006146.1 + 92290 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92260 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92200 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92140 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92110 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92051 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92021 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 92320 0.68 0.406385
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCu--- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGGcagu -5'
28853 3' -65.4 NC_006146.1 + 113865 0.68 0.390421
Target:  5'- cAACCc--UGGCGGCUucgcCCCGGCCGUg- -3'
miRNA:   3'- -UUGGcccACCGCCGA----GGGCCGGCAgu -5'
28853 3' -65.4 NC_006146.1 + 114312 0.68 0.374872
Target:  5'- aGACCGGcGgcgGGCucGGCgCCCGGCCGcCc -3'
miRNA:   3'- -UUGGCC-Ca--CCG--CCGaGGGCCGGCaGu -5'
28853 3' -65.4 NC_006146.1 + 92230 0.68 0.374872
Target:  5'- uGCUGGGgGGCGGg-CCCGGCCuGUg- -3'
miRNA:   3'- uUGGCCCaCCGCCgaGGGCCGG-CAgu -5'
28853 3' -65.4 NC_006146.1 + 32979 0.69 0.359747
Target:  5'- cGCUGGGUcGCGGCUgcccccggaaccCCCGGCCcuGUCc -3'
miRNA:   3'- uUGGCCCAcCGCCGA------------GGGCCGG--CAGu -5'
28853 3' -65.4 NC_006146.1 + 98300 0.69 0.359747
Target:  5'- --gUGGGgcugagGGCGuGCUCCgUGGCCGUCu -3'
miRNA:   3'- uugGCCCa-----CCGC-CGAGG-GCCGGCAGu -5'
28853 3' -65.4 NC_006146.1 + 53602 0.69 0.352347
Target:  5'- uGCCGGGgaaaggGcGCGGCaCCgGGCCGUgCAc -3'
miRNA:   3'- uUGGCCCa-----C-CGCCGaGGgCCGGCA-GU- -5'
28853 3' -65.4 NC_006146.1 + 169238 0.69 0.323833
Target:  5'- cGGCCGGGggcugaGGgGGCUCCCgagggcggGGCCGg-- -3'
miRNA:   3'- -UUGGCCCa-----CCgCCGAGGG--------CCGGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.