miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28853 5' -53.8 NC_006146.1 + 137370 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 136348 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 137556 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 137184 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 136812 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 136255 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 136069 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 129848 0.66 0.965748
Target:  5'- ---cACcCCGAgGCccccAGGGCCGCCGCGg -3'
miRNA:   3'- cuauUGcGGCU-CGu---UUUCGGCGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 135605 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 135790 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 135326 0.66 0.965748
Target:  5'- --gGugGCCGGGCc---GCUGCCGgGu -3'
miRNA:   3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5'
28853 5' -53.8 NC_006146.1 + 163218 0.66 0.962363
Target:  5'- -----aGCCGGGCA--GGCCGUagGCAg -3'
miRNA:   3'- cuauugCGGCUCGUuuUCGGCGg-CGU- -5'
28853 5' -53.8 NC_006146.1 + 71455 0.66 0.962363
Target:  5'- -cUGGCGCCGAggaGCGAGGGCCucaUGCu -3'
miRNA:   3'- cuAUUGCGGCU---CGUUUUCGGcg-GCGu -5'
28853 5' -53.8 NC_006146.1 + 56331 0.66 0.962363
Target:  5'- ---uGCGCCGcGagaaGGAGGCCGCCcggaGCAg -3'
miRNA:   3'- cuauUGCGGCuCg---UUUUCGGCGG----CGU- -5'
28853 5' -53.8 NC_006146.1 + 22289 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 42687 0.66 0.958751
Target:  5'- ---cGCGCCGAaagaGCGucuGGCCcggcGCCGCGg -3'
miRNA:   3'- cuauUGCGGCU----CGUuu-UCGG----CGGCGU- -5'
28853 5' -53.8 NC_006146.1 + 40158 0.66 0.958751
Target:  5'- --cGGCGucuucuCCGGGgAAGAGcCCGCCGCc -3'
miRNA:   3'- cuaUUGC------GGCUCgUUUUC-GGCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 19211 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5'
28853 5' -53.8 NC_006146.1 + 75656 0.66 0.958751
Target:  5'- uAUGACGCCGcgggucAGCAGucauGGCCGCU-CAa -3'
miRNA:   3'- cUAUUGCGGC------UCGUUu---UCGGCGGcGU- -5'
28853 5' -53.8 NC_006146.1 + 28445 0.66 0.958751
Target:  5'- --aGACuCCGGGCcccAAGGCgGCCGCc -3'
miRNA:   3'- cuaUUGcGGCUCGu--UUUCGgCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.