Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28854 | 5' | -52.5 | NC_006146.1 | + | 43354 | 0.7 | 0.900961 |
Target: 5'- aGGcGCAGcccgugGCAGgGGGUGGCuuAGCg -3' miRNA: 3'- -CCaCGUCaa----CGUCgUCCACUGcuUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 42847 | 0.72 | 0.78863 |
Target: 5'- cGGUGgucUUGCGGgGGGUGACGGucaGGCa -3' miRNA: 3'- -CCACgucAACGUCgUCCACUGCU---UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 41484 | 0.66 | 0.984946 |
Target: 5'- cGUGCAGaUGCGGgAGuuuGUGGucUGggGCa -3' miRNA: 3'- cCACGUCaACGUCgUC---CACU--GCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 41466 | 0.7 | 0.880392 |
Target: 5'- --gGCGGUgGCAGCGgcGGUGAUGuuGCu -3' miRNA: 3'- ccaCGUCAaCGUCGU--CCACUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 40456 | 0.7 | 0.880392 |
Target: 5'- gGGUGCGGcaaugGCcuGGUGGGUGAaggGggGCa -3' miRNA: 3'- -CCACGUCaa---CG--UCGUCCACUg--CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 40011 | 0.71 | 0.865524 |
Target: 5'- cGGUGUGGgcGUAGCAGGgGGCcugcugGggGCc -3' miRNA: 3'- -CCACGUCaaCGUCGUCCaCUG------CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 39773 | 0.66 | 0.986659 |
Target: 5'- --cGCAGacGCGGCAGGUG-Cu-GGCu -3' miRNA: 3'- ccaCGUCaaCGUCGUCCACuGcuUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 39271 | 0.67 | 0.974579 |
Target: 5'- gGGUGUGGgccccggacucgagaCGGCAGGUGGCagcaGAGGCc -3' miRNA: 3'- -CCACGUCaac------------GUCGUCCACUG----CUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 38811 | 0.66 | 0.981024 |
Target: 5'- gGGUGCAcaucUGCAGcCAGGcccUGAgccUGggGCa -3' miRNA: 3'- -CCACGUca--ACGUC-GUCC---ACU---GCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 38396 | 0.68 | 0.953625 |
Target: 5'- uGGUGCGGaUGCaugGGguGGUGGCaucuggGAuuAGCg -3' miRNA: 3'- -CCACGUCaACG---UCguCCACUG------CU--UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 33998 | 0.68 | 0.949464 |
Target: 5'- cGGUGCAccuGgaagGCAGgGGGgggGuCGggGCa -3' miRNA: 3'- -CCACGU---Caa--CGUCgUCCa--CuGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 33340 | 0.67 | 0.9647 |
Target: 5'- gGGUGCuccGggGCAGcCGGGUGGCcgccGGUg -3' miRNA: 3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 33218 | 0.71 | 0.857759 |
Target: 5'- uGGUGCuccGggGCAGcCGGGUGGCcgccGGCg -3' miRNA: 3'- -CCACGu--CaaCGUC-GUCCACUGcu--UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 19136 | 0.67 | 0.967939 |
Target: 5'- uGG-GCAGgcGCA--AGGcUGACGggGCc -3' miRNA: 3'- -CCaCGUCaaCGUcgUCC-ACUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 18959 | 0.67 | 0.966022 |
Target: 5'- uGGUGCgccagcggccccuagAGaggGCGGCAGG-GcCGGAGCc -3' miRNA: 3'- -CCACG---------------UCaa-CGUCGUCCaCuGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 14030 | 0.66 | 0.978798 |
Target: 5'- aGG-GCAGggaGCAgGCGGGggcaGGCGcAAGCg -3' miRNA: 3'- -CCaCGUCaa-CGU-CGUCCa---CUGC-UUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 11362 | 0.66 | 0.984946 |
Target: 5'- uGGcGCAGgcGCugcgcgucaGGCAGGUGGgcaagcuggUGGAGCu -3' miRNA: 3'- -CCaCGUCaaCG---------UCGUCCACU---------GCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 10986 | 0.66 | 0.978798 |
Target: 5'- --aGCAGgcgGCGcuGCcGGUGACGggGg -3' miRNA: 3'- ccaCGUCaa-CGU--CGuCCACUGCuuCg -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 9902 | 0.74 | 0.699962 |
Target: 5'- cGGUGaCGGccagGCAGgAGGcGACGGAGCc -3' miRNA: 3'- -CCAC-GUCaa--CGUCgUCCaCUGCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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