Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28854 | 5' | -52.5 | NC_006146.1 | + | 14030 | 0.66 | 0.978798 |
Target: 5'- aGG-GCAGggaGCAgGCGGGggcaGGCGcAAGCg -3' miRNA: 3'- -CCaCGUCaa-CGU-CGUCCa---CUGC-UUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 88074 | 0.66 | 0.981024 |
Target: 5'- cGGUGCAGUUGCAcccGUGGucaugcuaucuuGUaACGggGUa -3' miRNA: 3'- -CCACGUCAACGU---CGUC------------CAcUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 11362 | 0.66 | 0.984946 |
Target: 5'- uGGcGCAGgcGCugcgcgucaGGCAGGUGGgcaagcuggUGGAGCu -3' miRNA: 3'- -CCaCGUCaaCG---------UCGUCCACU---------GCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 77912 | 0.68 | 0.940415 |
Target: 5'- aGGcGCAGggGCGggcggccucGCAGGUGcCGggGg -3' miRNA: 3'- -CCaCGUCaaCGU---------CGUCCACuGCuuCg -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 55864 | 0.68 | 0.940415 |
Target: 5'- aGGUGCAGuUUGUggugauuGCAGGacUGACGuguuccugGAGCa -3' miRNA: 3'- -CCACGUC-AACGu------CGUCC--ACUGC--------UUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 71643 | 0.69 | 0.935523 |
Target: 5'- cGUGCGGgaagGCGGCgAGGgaagGAaGAAGCc -3' miRNA: 3'- cCACGUCaa--CGUCG-UCCa---CUgCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 51132 | 1.15 | 0.002693 |
Target: 5'- gGGUGCAGUUGCAGCAGGUGACGAAGCg -3' miRNA: 3'- -CCACGUCAACGUCGUCCACUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 9902 | 0.74 | 0.699962 |
Target: 5'- cGGUGaCGGccagGCAGgAGGcGACGGAGCc -3' miRNA: 3'- -CCAC-GUCaa--CGUCgUCCaCUGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 100285 | 0.72 | 0.788629 |
Target: 5'- uGGgGCGGagGCAGCAGaGgccGugGAGGCa -3' miRNA: 3'- -CCaCGUCaaCGUCGUC-Ca--CugCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 40011 | 0.71 | 0.865524 |
Target: 5'- cGGUGUGGgcGUAGCAGGgGGCcugcugGggGCc -3' miRNA: 3'- -CCACGUCaaCGUCGUCCaCUG------CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 41466 | 0.7 | 0.880392 |
Target: 5'- --gGCGGUgGCAGCGgcGGUGAUGuuGCu -3' miRNA: 3'- ccaCGUCAaCGUCGU--CCACUGCuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 40456 | 0.7 | 0.880392 |
Target: 5'- gGGUGCGGcaaugGCcuGGUGGGUGAaggGggGCa -3' miRNA: 3'- -CCACGUCaa---CG--UCGUCCACUg--CuuCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 59541 | 0.7 | 0.887484 |
Target: 5'- aGGUGgGGgUGCAGCGuGGcGAUGGAGg -3' miRNA: 3'- -CCACgUCaACGUCGU-CCaCUGCUUCg -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 128086 | 0.7 | 0.887484 |
Target: 5'- -aUGCAGgUGCGGgAGG-GGcCGAGGCa -3' miRNA: 3'- ccACGUCaACGUCgUCCaCU-GCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 115404 | 0.7 | 0.894342 |
Target: 5'- cGUGCAGgagGCAGCuGGcGGCcGGGCc -3' miRNA: 3'- cCACGUCaa-CGUCGuCCaCUGcUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 110582 | 0.69 | 0.924994 |
Target: 5'- --aGCGGUUGCGGUGGGUcuCGAccgucaGGCa -3' miRNA: 3'- ccaCGUCAACGUCGUCCAcuGCU------UCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 64180 | 0.69 | 0.930383 |
Target: 5'- uGG-GUGGggGCAGCaggaguugcaAGGUGucGCGGAGCu -3' miRNA: 3'- -CCaCGUCaaCGUCG----------UCCAC--UGCUUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 74033 | 0.69 | 0.930383 |
Target: 5'- cGGaUGCAGUcuCGGCGGcUGACGcGGCa -3' miRNA: 3'- -CC-ACGUCAacGUCGUCcACUGCuUCG- -5' |
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28854 | 5' | -52.5 | NC_006146.1 | + | 128778 | 0.66 | 0.984946 |
Target: 5'- aGUGUGGc--CAGCAGG-GcCGAAGCg -3' miRNA: 3'- cCACGUCaacGUCGUCCaCuGCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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