miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28854 5' -52.5 NC_006146.1 + 90081 0.72 0.797877
Target:  5'- cGGUGCAGgggggaGCAGUggAGGcaGCGGAGCa -3'
miRNA:   3'- -CCACGUCaa----CGUCG--UCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 42847 0.72 0.78863
Target:  5'- cGGUGgucUUGCGGgGGGUGACGGucaGGCa -3'
miRNA:   3'- -CCACgucAACGUCgUCCACUGCU---UCG- -5'
28854 5' -52.5 NC_006146.1 + 56354 0.72 0.78863
Target:  5'- cGGaGCAGguaGUAgGCGuGGUGGCGGAGCa -3'
miRNA:   3'- -CCaCGUCaa-CGU-CGU-CCACUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 44807 0.72 0.785827
Target:  5'- uGGUGU-GUuucugaggccccgcUGCGGCuGGUGACGGAGg -3'
miRNA:   3'- -CCACGuCA--------------ACGUCGuCCACUGCUUCg -5'
28854 5' -52.5 NC_006146.1 + 166680 0.75 0.648167
Target:  5'- cGGUGUGGccugGCAGgGGGgaGACGggGCa -3'
miRNA:   3'- -CCACGUCaa--CGUCgUCCa-CUGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 43354 0.7 0.900961
Target:  5'- aGGcGCAGcccgugGCAGgGGGUGGCuuAGCg -3'
miRNA:   3'- -CCaCGUCaa----CGUCgUCCACUGcuUCG- -5'
28854 5' -52.5 NC_006146.1 + 53844 0.7 0.907338
Target:  5'- aGGUGUGGUcccggagGCGGUAGGcGACGcuGGCc -3'
miRNA:   3'- -CCACGUCAa------CGUCGUCCaCUGCu-UCG- -5'
28854 5' -52.5 NC_006146.1 + 52758 0.68 0.953625
Target:  5'- --cGCAGUUGCugacGCAcuGGaugccGGCGAAGCg -3'
miRNA:   3'- ccaCGUCAACGu---CGU--CCa----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 38396 0.68 0.953625
Target:  5'- uGGUGCGGaUGCaugGGguGGUGGCaucuggGAuuAGCg -3'
miRNA:   3'- -CCACGUCaACG---UCguCCACUG------CU--UCG- -5'
28854 5' -52.5 NC_006146.1 + 33998 0.68 0.949464
Target:  5'- cGGUGCAccuGgaagGCAGgGGGgggGuCGggGCa -3'
miRNA:   3'- -CCACGU---Caa--CGUCgUCCa--CuGCuuCG- -5'
28854 5' -52.5 NC_006146.1 + 55289 0.68 0.943694
Target:  5'- --cGCGGUggGCAGCAGccggaaaaagugcagGGCGAAGCc -3'
miRNA:   3'- ccaCGUCAa-CGUCGUCca-------------CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 57354 0.69 0.935523
Target:  5'- gGGUGuCGGUgagggaggcUGCGGC-GGUGGCGccgguGGGCu -3'
miRNA:   3'- -CCAC-GUCA---------ACGUCGuCCACUGC-----UUCG- -5'
28854 5' -52.5 NC_006146.1 + 123327 0.69 0.935523
Target:  5'- uGUGCAGcUGCuggaagAGgGGGUGACGGuuguaGGCc -3'
miRNA:   3'- cCACGUCaACG------UCgUCCACUGCU-----UCG- -5'
28854 5' -52.5 NC_006146.1 + 123212 0.69 0.919357
Target:  5'- aGG-GCGGUggacaGCAGCuGGUacagGGCGAGGUu -3'
miRNA:   3'- -CCaCGUCAa----CGUCGuCCA----CUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 90196 0.69 0.919357
Target:  5'- aGUGCAGgggGCAGaGGGggaagagGAgGAGGCg -3'
miRNA:   3'- cCACGUCaa-CGUCgUCCa------CUgCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 56848 0.7 0.907338
Target:  5'- uGGcgGCGGggGCGGCAGcuuUGGCuGggGCu -3'
miRNA:   3'- -CCa-CGUCaaCGUCGUCc--ACUG-CuuCG- -5'
28854 5' -52.5 NC_006146.1 + 66358 0.7 0.907338
Target:  5'- cGUGCAGggagugaUGCAGCAGGUuuUGAauguugagGGCg -3'
miRNA:   3'- cCACGUCa------ACGUCGUCCAcuGCU--------UCG- -5'
28854 5' -52.5 NC_006146.1 + 90114 0.7 0.907338
Target:  5'- aGGagGCAGUggaGCAGgAGGcaGCGGAGCa -3'
miRNA:   3'- -CCa-CGUCAa--CGUCgUCCacUGCUUCG- -5'
28854 5' -52.5 NC_006146.1 + 149831 0.79 0.465686
Target:  5'- gGGUGguGUggGCGGcCAGGgccucGGCGAAGCg -3'
miRNA:   3'- -CCACguCAa-CGUC-GUCCa----CUGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.