Results 21 - 40 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28855 | 5' | -52.6 | NC_006146.1 | + | 35262 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 35169 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 35076 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 34612 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 35634 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 34705 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 34798 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 34891 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 34983 | 0.66 | 0.987003 |
Target: 5'- aCCCgGCCcccggCCCCGAGcUCCAgGACc -3' miRNA: 3'- -GGG-CGGucua-GGGGUUCuAGGUaUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 169905 | 0.66 | 0.985334 |
Target: 5'- gUUGCCAGGuuaaguUCCCCGAGGaCCAaUGAUc -3' miRNA: 3'- gGGCGGUCU------AGGGGUUCUaGGU-AUUG- -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 2572 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3' miRNA: 3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 1640 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3' miRNA: 3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 3504 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3' miRNA: 3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 709 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCAGG-CCCCGGcc-CCGc--- -3' miRNA: 3'- -GGGCGGUCUaGGGGUUcuaGGUauug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 142418 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3' miRNA: 3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 145496 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3' miRNA: 3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 148574 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3' miRNA: 3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 151652 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3' miRNA: 3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 154729 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3' miRNA: 3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' |
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28855 | 5' | -52.6 | NC_006146.1 | + | 157807 | 0.66 | 0.985334 |
Target: 5'- cCCCGCCuGGcgaCCCUggGGUCUGUc-- -3' miRNA: 3'- -GGGCGGuCUa--GGGGuuCUAGGUAuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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