miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 3' -63.2 NC_006146.1 + 57215 0.66 0.682862
Target:  5'- uCCCCGgGccGGAgGCcgggCCC-GGGCCCGa -3'
miRNA:   3'- -GGGGCgU--CCUgCGca--GGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 47247 0.66 0.682862
Target:  5'- --gCGCGGGuCGaCGUggcCCCUGG-CCCGg -3'
miRNA:   3'- gggGCGUCCuGC-GCA---GGGACCuGGGC- -5'
28856 3' -63.2 NC_006146.1 + 141889 0.66 0.682862
Target:  5'- gUCCGUgccuAGGAgcgcCGCuGUUCCaGGACCCGg -3'
miRNA:   3'- gGGGCG----UCCU----GCG-CAGGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 19202 0.66 0.673411
Target:  5'- --aCGCAGG-CGCGcCUCaGGGCCUGg -3'
miRNA:   3'- gggGCGUCCuGCGCaGGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 100045 0.66 0.673411
Target:  5'- uUCUCGCGGu-CGUGuUCCCUcacucGGGCCCGc -3'
miRNA:   3'- -GGGGCGUCcuGCGC-AGGGA-----CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 116120 0.66 0.673411
Target:  5'- gCCCa--AGG-CGCGcUCCCUGGcgGCCCu -3'
miRNA:   3'- -GGGgcgUCCuGCGC-AGGGACC--UGGGc -5'
28856 3' -63.2 NC_006146.1 + 33932 0.66 0.673411
Target:  5'- gUCCGguGGGUGCgGUCCgCUGGGUCCGc -3'
miRNA:   3'- gGGGCguCCUGCG-CAGG-GACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 127553 0.66 0.673411
Target:  5'- cCCCUGCcacGGGCuGCGccugcuggCCCUGGGCggCCGa -3'
miRNA:   3'- -GGGGCGu--CCUG-CGCa-------GGGACCUG--GGC- -5'
28856 3' -63.2 NC_006146.1 + 138780 0.66 0.673411
Target:  5'- aCCCCGgGGuGACGUGgcacCCCUGcGugCUu -3'
miRNA:   3'- -GGGGCgUC-CUGCGCa---GGGAC-CugGGc -5'
28856 3' -63.2 NC_006146.1 + 34950 0.66 0.673411
Target:  5'- aCCCCGgGGuGACGUGgcacCCCUGcGugCUu -3'
miRNA:   3'- -GGGGCgUC-CUGCGCa---GGGAC-CugGGc -5'
28856 3' -63.2 NC_006146.1 + 114368 0.66 0.667726
Target:  5'- gCCCGCGuGACGCGUCagCUGcugauggccggcgacGACCCc -3'
miRNA:   3'- gGGGCGUcCUGCGCAGg-GAC---------------CUGGGc -5'
28856 3' -63.2 NC_006146.1 + 39167 0.66 0.66393
Target:  5'- cUCCCaGCAGGucCGUGUCUCUccaGGugCCc -3'
miRNA:   3'- -GGGG-CGUCCu-GCGCAGGGA---CCugGGc -5'
28856 3' -63.2 NC_006146.1 + 111912 0.66 0.66393
Target:  5'- gCUUCGUucaGGGACGCGUUCUUGGugGCCa- -3'
miRNA:   3'- -GGGGCG---UCCUGCGCAGGGACC--UGGgc -5'
28856 3' -63.2 NC_006146.1 + 15982 0.66 0.66393
Target:  5'- uCCCUGCGccugcgaagggcGGACGCGgucagCCCgGGcgagGCCCu -3'
miRNA:   3'- -GGGGCGU------------CCUGCGCa----GGGaCC----UGGGc -5'
28856 3' -63.2 NC_006146.1 + 68349 0.66 0.66393
Target:  5'- aCCUGCugcuGGACGCcUCUgUGGAgaucCCCGu -3'
miRNA:   3'- gGGGCGu---CCUGCGcAGGgACCU----GGGC- -5'
28856 3' -63.2 NC_006146.1 + 124837 0.66 0.661081
Target:  5'- gCCCUGCAGcAgcuauggcacucgcUGCGUcCCCUGGAgggcCCCGu -3'
miRNA:   3'- -GGGGCGUCcU--------------GCGCA-GGGACCU----GGGC- -5'
28856 3' -63.2 NC_006146.1 + 167885 0.66 0.654427
Target:  5'- gCCC-CGGGGCG-G-CCCggGGACCCu -3'
miRNA:   3'- gGGGcGUCCUGCgCaGGGa-CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 168817 0.66 0.654427
Target:  5'- gCCC-CGGGGCG-G-CCCggGGACCCu -3'
miRNA:   3'- gGGGcGUCCUGCgCaGGGa-CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 125952 0.66 0.654427
Target:  5'- uCCCC-CGGGGCcuccccGCGcCCCUGG-CCaCGa -3'
miRNA:   3'- -GGGGcGUCCUG------CGCaGGGACCuGG-GC- -5'
28856 3' -63.2 NC_006146.1 + 44871 0.66 0.654427
Target:  5'- uCCCCGCuGaGAa--GcCCCUGGGCUCGc -3'
miRNA:   3'- -GGGGCGuC-CUgcgCaGGGACCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.