Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28856 | 3' | -63.2 | NC_006146.1 | + | 141889 | 0.66 | 0.682862 |
Target: 5'- gUCCGUgccuAGGAgcgcCGCuGUUCCaGGACCCGg -3' miRNA: 3'- gGGGCG----UCCU----GCG-CAGGGaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 129636 | 0.66 | 0.644909 |
Target: 5'- cCUCCGCGGG-CGCGUgCUcc-GCCCGg -3' miRNA: 3'- -GGGGCGUCCuGCGCAgGGaccUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 127385 | 0.66 | 0.644909 |
Target: 5'- cCCUCGU-GGAgGUGUCUuggggCUGGGCCCc -3' miRNA: 3'- -GGGGCGuCCUgCGCAGG-----GACCUGGGc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 60504 | 0.66 | 0.644909 |
Target: 5'- cCCCCGacggcgAGGGUGC-UCCCacUGGGCCCa -3' miRNA: 3'- -GGGGCg-----UCCUGCGcAGGG--ACCUGGGc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 14264 | 0.66 | 0.643956 |
Target: 5'- uCCCCGUuugAGGcgacagaaugaccGCGCGugcagcgcccugUCCCUGGAgCUGg -3' miRNA: 3'- -GGGGCG---UCC-------------UGCGC------------AGGGACCUgGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 132113 | 0.66 | 0.635381 |
Target: 5'- aCCCCGCAGGACuuccacaaGCacuugUUCUGcGACCCc -3' miRNA: 3'- -GGGGCGUCCUG--------CGca---GGGAC-CUGGGc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 110856 | 0.66 | 0.635381 |
Target: 5'- gCCCGaucagaGGGACgcuGCGUCUC-GGGCUCGg -3' miRNA: 3'- gGGGCg-----UCCUG---CGCAGGGaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 64690 | 0.66 | 0.635381 |
Target: 5'- uCCCC-CAGGACaccaggcccugGCaGgaggCCCgGGACCCGu -3' miRNA: 3'- -GGGGcGUCCUG-----------CG-Ca---GGGaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 8047 | 0.66 | 0.635381 |
Target: 5'- aCCCGCuGGACcCGgCCCUGGGggugUCUGg -3' miRNA: 3'- gGGGCGuCCUGcGCaGGGACCU----GGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 32962 | 0.66 | 0.645861 |
Target: 5'- cCCCCGUgaacGGGGCGCGcugggucgcggcugcCCCcGGAaccCCCGg -3' miRNA: 3'- -GGGGCG----UCCUGCGCa--------------GGGaCCU---GGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 64217 | 0.66 | 0.654427 |
Target: 5'- cUCCgGCAGGAgGCacaucugCgCCUGGGCCgGg -3' miRNA: 3'- -GGGgCGUCCUgCGca-----G-GGACCUGGgC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 125952 | 0.66 | 0.654427 |
Target: 5'- uCCCC-CGGGGCcuccccGCGcCCCUGG-CCaCGa -3' miRNA: 3'- -GGGGcGUCCUG------CGCaGGGACCuGG-GC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 127553 | 0.66 | 0.673411 |
Target: 5'- cCCCUGCcacGGGCuGCGccugcuggCCCUGGGCggCCGa -3' miRNA: 3'- -GGGGCGu--CCUG-CGCa-------GGGACCUG--GGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 116120 | 0.66 | 0.673411 |
Target: 5'- gCCCa--AGG-CGCGcUCCCUGGcgGCCCu -3' miRNA: 3'- -GGGgcgUCCuGCGC-AGGGACC--UGGGc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 19202 | 0.66 | 0.673411 |
Target: 5'- --aCGCAGG-CGCGcCUCaGGGCCUGg -3' miRNA: 3'- gggGCGUCCuGCGCaGGGaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 100045 | 0.66 | 0.673411 |
Target: 5'- uUCUCGCGGu-CGUGuUCCCUcacucGGGCCCGc -3' miRNA: 3'- -GGGGCGUCcuGCGC-AGGGA-----CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 114368 | 0.66 | 0.667726 |
Target: 5'- gCCCGCGuGACGCGUCagCUGcugauggccggcgacGACCCc -3' miRNA: 3'- gGGGCGUcCUGCGCAGg-GAC---------------CUGGGc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 68349 | 0.66 | 0.66393 |
Target: 5'- aCCUGCugcuGGACGCcUCUgUGGAgaucCCCGu -3' miRNA: 3'- gGGGCGu---CCUGCGcAGGgACCU----GGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 15982 | 0.66 | 0.66393 |
Target: 5'- uCCCUGCGccugcgaagggcGGACGCGgucagCCCgGGcgagGCCCu -3' miRNA: 3'- -GGGGCGU------------CCUGCGCa----GGGaCC----UGGGc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 124837 | 0.66 | 0.661081 |
Target: 5'- gCCCUGCAGcAgcuauggcacucgcUGCGUcCCCUGGAgggcCCCGu -3' miRNA: 3'- -GGGGCGUCcU--------------GCGCA-GGGACCU----GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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