miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 3' -63.2 NC_006146.1 + 47840 1.1 0.000813
Target:  5'- gCCCCGCAGGACGCGUCCCUGGACCCGg -3'
miRNA:   3'- -GGGGCGUCCUGCGCAGGGACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 170431 0.82 0.074701
Target:  5'- gUCCCGCGGGgcccgGCGCGUgCCgggGGACCCGg -3'
miRNA:   3'- -GGGGCGUCC-----UGCGCAgGGa--CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 169500 0.82 0.074701
Target:  5'- gUCCCGCGGGgcccgGCGCGUgCCgggGGACCCGg -3'
miRNA:   3'- -GGGGCGUCC-----UGCGCAgGGa--CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 168568 0.82 0.074701
Target:  5'- gUCCCGCGGGgcccgGCGCGUgCCgggGGACCCGg -3'
miRNA:   3'- -GGGGCGUCC-----UGCGCAgGGa--CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 167636 0.81 0.093373
Target:  5'- gUCCCGCGGGgcccgGCGCGUgCCggGGGCCCGg -3'
miRNA:   3'- -GGGGCGUCC-----UGCGCAgGGa-CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 112709 0.79 0.116409
Target:  5'- gCCCGCAGcaGgGCGUCCCUGaGGCCCGu -3'
miRNA:   3'- gGGGCGUCc-UgCGCAGGGAC-CUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 53886 0.78 0.140896
Target:  5'- cCCCCGUAGGGCGUagcccagGUCCa-GGGCCCGc -3'
miRNA:   3'- -GGGGCGUCCUGCG-------CAGGgaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 56062 0.76 0.179041
Target:  5'- cUCCCGCGGGAagGCGUCCCaccGGGCCa- -3'
miRNA:   3'- -GGGGCGUCCUg-CGCAGGGa--CCUGGgc -5'
28856 3' -63.2 NC_006146.1 + 41607 0.76 0.196534
Target:  5'- gCCCGgGGGGCuG-GUCCgCUGGGCCCGg -3'
miRNA:   3'- gGGGCgUCCUG-CgCAGG-GACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 158122 0.74 0.241395
Target:  5'- cCCCUGCAGGGcCGCGUCCa-GG-UCCGg -3'
miRNA:   3'- -GGGGCGUCCU-GCGCAGGgaCCuGGGC- -5'
28856 3' -63.2 NC_006146.1 + 137647 0.74 0.26983
Target:  5'- aCCCggaGCGGGGCaGCGgCCCggcGGACCCGc -3'
miRNA:   3'- -GGGg--CGUCCUG-CGCaGGGa--CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 156520 0.73 0.275831
Target:  5'- gCCCggaggggaGCGGGAgGCGagaUCCCgGGACCCGa -3'
miRNA:   3'- -GGGg-------CGUCCUgCGC---AGGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 128745 0.73 0.300903
Target:  5'- uUCCCGCAGGGgGUGUCCgaGG-CCUu -3'
miRNA:   3'- -GGGGCGUCCUgCGCAGGgaCCuGGGc -5'
28856 3' -63.2 NC_006146.1 + 137949 0.72 0.314084
Target:  5'- gCCCCGUucacgggggAGGAuCGCGgccgggccUCCCggGGGCCCGg -3'
miRNA:   3'- -GGGGCG---------UCCU-GCGC--------AGGGa-CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 137525 0.72 0.320837
Target:  5'- aCCCggaGCGGGGCaGCGgCCCggcGGACCCa -3'
miRNA:   3'- -GGGg--CGUCCUG-CGCaGGGa--CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 37647 0.72 0.327698
Target:  5'- uUCUCGU-GGACaGCGUCCCUGGGgCUGa -3'
miRNA:   3'- -GGGGCGuCCUG-CGCAGGGACCUgGGC- -5'
28856 3' -63.2 NC_006146.1 + 155324 0.71 0.355484
Target:  5'- cCCUCGCc-GACGCGccuguccUCCCagGGACCCGa -3'
miRNA:   3'- -GGGGCGucCUGCGC-------AGGGa-CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 29164 0.71 0.363616
Target:  5'- uUCCCGguGcAC-CGUCCCUGGACaCUGg -3'
miRNA:   3'- -GGGGCguCcUGcGCAGGGACCUG-GGC- -5'
28856 3' -63.2 NC_006146.1 + 121644 0.71 0.378728
Target:  5'- aCCUCuaCAGGGgGCuaccggCCCUGGACCCGg -3'
miRNA:   3'- -GGGGc-GUCCUgCGca----GGGACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 165808 0.71 0.402171
Target:  5'- gCCgGCuaGGGGgGCGUCCCUGG-CCgCGu -3'
miRNA:   3'- gGGgCG--UCCUgCGCAGGGACCuGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.