miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 3' -63.2 NC_006146.1 + 165808 0.71 0.402171
Target:  5'- gCCgGCuaGGGGgGCGUCCCUGG-CCgCGu -3'
miRNA:   3'- gGGgCG--UCCUgCGCAGGGACCuGG-GC- -5'
28856 3' -63.2 NC_006146.1 + 136793 0.71 0.405366
Target:  5'- cCCCCGUgaacGGGGCGCGcugggucgcggcugCCCcccgGGACCCc -3'
miRNA:   3'- -GGGGCG----UCCUGCGCa-------------GGGa---CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 137858 0.7 0.434824
Target:  5'- -gUgGguGGGCGUGUCCC-GGGCCCc -3'
miRNA:   3'- ggGgCguCCUGCGCAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 109027 0.7 0.434824
Target:  5'- aCCCG-AGGGCGCGcCCCcgUGGAgaccucugcCCCGg -3'
miRNA:   3'- gGGGCgUCCUGCGCaGGG--ACCU---------GGGC- -5'
28856 3' -63.2 NC_006146.1 + 167684 0.7 0.443224
Target:  5'- aCCCgaggggcgaGCGGGGgGCuUCCCcgGGGCCCGa -3'
miRNA:   3'- gGGG---------CGUCCUgCGcAGGGa-CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 169549 0.7 0.443224
Target:  5'- aCCCgaggggcgaGCGGGGgGCuUCCCcgGGGCCCGa -3'
miRNA:   3'- gGGG---------CGUCCUgCGcAGGGa-CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 168617 0.7 0.443224
Target:  5'- aCCCgaggggcgaGCGGGGgGCuUCCCcgGGGCCCGa -3'
miRNA:   3'- gGGG---------CGUCCUgCGcAGGGa-CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 5152 0.7 0.443224
Target:  5'- gCCCUGCGaGACGCccugcugaaGUUCCUGGccagGCCCGa -3'
miRNA:   3'- -GGGGCGUcCUGCG---------CAGGGACC----UGGGC- -5'
28856 3' -63.2 NC_006146.1 + 40062 0.7 0.451715
Target:  5'- gUCCGUAGGACaGCGUCUCccggcggaGGGCCUGc -3'
miRNA:   3'- gGGGCGUCCUG-CGCAGGGa-------CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 116966 0.69 0.460294
Target:  5'- cCCCUGCguccggaccucgAGGagcucaacgaGCGCGUggagcgggCCCUGGACCUGg -3'
miRNA:   3'- -GGGGCG------------UCC----------UGCGCA--------GGGACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 14913 0.69 0.460294
Target:  5'- cCCCCGgAGGugGCGgagCUCUcGGAgCUGc -3'
miRNA:   3'- -GGGGCgUCCugCGCa--GGGA-CCUgGGC- -5'
28856 3' -63.2 NC_006146.1 + 157515 0.69 0.468959
Target:  5'- cCUCCGUccucuGGACuaGgggCCCUGGGCCCc -3'
miRNA:   3'- -GGGGCGu----CCUGcgCa--GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 154437 0.69 0.468959
Target:  5'- cCUCCGUccucuGGACuaGgggCCCUGGGCCCc -3'
miRNA:   3'- -GGGGCGu----CCUGcgCa--GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 142125 0.69 0.468959
Target:  5'- cCUCCGUccucuGGACuaGgggCCCUGGGCCCc -3'
miRNA:   3'- -GGGGCGu----CCUGcgCa--GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 151359 0.69 0.468959
Target:  5'- cCUCCGUccucuGGACuaGgggCCCUGGGCCCc -3'
miRNA:   3'- -GGGGCGu----CCUGcgCa--GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 148281 0.69 0.468959
Target:  5'- cCUCCGUccucuGGACuaGgggCCCUGGGCCCc -3'
miRNA:   3'- -GGGGCGu----CCUGcgCa--GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 104100 0.69 0.468959
Target:  5'- aCUCCGCcucAUGCGcCgCCUGGGCCCGg -3'
miRNA:   3'- -GGGGCGuccUGCGCaG-GGACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 145203 0.69 0.468959
Target:  5'- cCUCCGUccucuGGACuaGgggCCCUGGGCCCc -3'
miRNA:   3'- -GGGGCGu----CCUGcgCa--GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 123057 0.69 0.477706
Target:  5'- aCgCCGgguccaGGGACGCGUCCUgcgGGGCCa- -3'
miRNA:   3'- -GgGGCg-----UCCUGCGCAGGGa--CCUGGgc -5'
28856 3' -63.2 NC_006146.1 + 51268 0.69 0.477706
Target:  5'- cUCCCGgaGGGugGCGUUgUUGGGCCa- -3'
miRNA:   3'- -GGGGCg-UCCugCGCAGgGACCUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.