miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 3' -63.2 NC_006146.1 + 169103 0.66 0.654427
Target:  5'- cUCCCGCGGcca--GUCCCUGGaugucggggaggGCCCGg -3'
miRNA:   3'- -GGGGCGUCcugcgCAGGGACC------------UGGGC- -5'
28856 3' -63.2 NC_006146.1 + 169749 0.66 0.654427
Target:  5'- gCCC-CGGGGCG-G-CCCggGGACCCu -3'
miRNA:   3'- gGGGcGUCCUGCgCaGGGa-CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 125952 0.66 0.654427
Target:  5'- uCCCC-CGGGGCcuccccGCGcCCCUGG-CCaCGa -3'
miRNA:   3'- -GGGGcGUCCUG------CGCaGGGACCuGG-GC- -5'
28856 3' -63.2 NC_006146.1 + 168171 0.66 0.654427
Target:  5'- cUCCCGCGGcca--GUCCCUGGaugucggggaggGCCCGg -3'
miRNA:   3'- -GGGGCGUCcugcgCAGGGACC------------UGGGC- -5'
28856 3' -63.2 NC_006146.1 + 64217 0.66 0.654427
Target:  5'- cUCCgGCAGGAgGCacaucugCgCCUGGGCCgGg -3'
miRNA:   3'- -GGGgCGUCCUgCGca-----G-GGACCUGGgC- -5'
28856 3' -63.2 NC_006146.1 + 170035 0.66 0.654427
Target:  5'- cUCCCGCGGcca--GUCCCUGGaugucggggaggGCCCGg -3'
miRNA:   3'- -GGGGCGUCcugcgCAGGGACC------------UGGGC- -5'
28856 3' -63.2 NC_006146.1 + 44871 0.66 0.654427
Target:  5'- uCCCCGCuGaGAa--GcCCCUGGGCUCGc -3'
miRNA:   3'- -GGGGCGuC-CUgcgCaGGGACCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 35185 0.66 0.652524
Target:  5'- gCCCCGCcuuuAGGAaacacCGCGUCCCagggagggaagaGGGCUCu -3'
miRNA:   3'- -GGGGCG----UCCU-----GCGCAGGGa-----------CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 32962 0.66 0.645861
Target:  5'- cCCCCGUgaacGGGGCGCGcugggucgcggcugcCCCcGGAaccCCCGg -3'
miRNA:   3'- -GGGGCG----UCCUGCGCa--------------GGGaCCU---GGGC- -5'
28856 3' -63.2 NC_006146.1 + 17615 0.66 0.644909
Target:  5'- uCUCCGCGuGcGCauaaugGCGgCCCUGGACCCa -3'
miRNA:   3'- -GGGGCGU-CcUG------CGCaGGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 16657 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 28968 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 44939 0.66 0.644909
Target:  5'- cUCUCGUggccaGGGGCGCGgggaggCCCcgggGGACUCGa -3'
miRNA:   3'- -GGGGCG-----UCCUGCGCa-----GGGa---CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 26849 0.66 0.644909
Target:  5'- uCUCCGCGuGcGCauaaugGCGgCCCUGGACCCa -3'
miRNA:   3'- -GGGGCGU-CcUG------CGCaGGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 23771 0.66 0.644909
Target:  5'- uCUCCGCGuGcGCauaaugGCGgCCCUGGACCCa -3'
miRNA:   3'- -GGGGCGU-CcUG------CGCaGGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 20693 0.66 0.644909
Target:  5'- uCUCCGCGuGcGCauaaugGCGgCCCUGGACCCa -3'
miRNA:   3'- -GGGGCGU-CcUG------CGCaGGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 22813 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 19735 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 60504 0.66 0.644909
Target:  5'- cCCCCGacggcgAGGGUGC-UCCCacUGGGCCCa -3'
miRNA:   3'- -GGGGCg-----UCCUGCGcAGGG--ACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 127385 0.66 0.644909
Target:  5'- cCCUCGU-GGAgGUGUCUuggggCUGGGCCCc -3'
miRNA:   3'- -GGGGCGuCCUgCGCAGG-----GACCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.