miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 3' -63.2 NC_006146.1 + 28968 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 25891 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 129636 0.66 0.644909
Target:  5'- cCUCCGCGGG-CGCGUgCUcc-GCCCGg -3'
miRNA:   3'- -GGGGCGUCCuGCGCAgGGaccUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 127385 0.66 0.644909
Target:  5'- cCCUCGU-GGAgGUGUCUuggggCUGGGCCCc -3'
miRNA:   3'- -GGGGCGuCCUgCGCAGG-----GACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 60504 0.66 0.644909
Target:  5'- cCCCCGacggcgAGGGUGC-UCCCacUGGGCCCa -3'
miRNA:   3'- -GGGGCg-----UCCUGCGcAGGG--ACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 14264 0.66 0.643956
Target:  5'- uCCCCGUuugAGGcgacagaaugaccGCGCGugcagcgcccugUCCCUGGAgCUGg -3'
miRNA:   3'- -GGGGCG---UCC-------------UGCGC------------AGGGACCUgGGC- -5'
28856 3' -63.2 NC_006146.1 + 49020 0.66 0.635381
Target:  5'- -gCCGCAGGGCGUucUCCgGGGCgCGg -3'
miRNA:   3'- ggGGCGUCCUGCGcaGGGaCCUGgGC- -5'
28856 3' -63.2 NC_006146.1 + 64690 0.66 0.635381
Target:  5'- uCCCC-CAGGACaccaggcccugGCaGgaggCCCgGGACCCGu -3'
miRNA:   3'- -GGGGcGUCCUG-----------CG-Ca---GGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 68035 0.66 0.635381
Target:  5'- gCCCGgccacgacCAGGugGCGgcugCCCUGGcuGCCa- -3'
miRNA:   3'- gGGGC--------GUCCugCGCa---GGGACC--UGGgc -5'
28856 3' -63.2 NC_006146.1 + 126976 0.66 0.635381
Target:  5'- aCCCCGCccgacugccgGGcGACGCgGUCCCggagcucaugUGGGCUCc -3'
miRNA:   3'- -GGGGCG----------UC-CUGCG-CAGGG----------ACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 132113 0.66 0.635381
Target:  5'- aCCCCGCAGGACuuccacaaGCacuugUUCUGcGACCCc -3'
miRNA:   3'- -GGGGCGUCCUG--------CGca---GGGAC-CUGGGc -5'
28856 3' -63.2 NC_006146.1 + 110856 0.66 0.635381
Target:  5'- gCCCGaucagaGGGACgcuGCGUCUC-GGGCUCGg -3'
miRNA:   3'- gGGGCg-----UCCUG---CGCAGGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 8047 0.66 0.635381
Target:  5'- aCCCGCuGGACcCGgCCCUGGGggugUCUGg -3'
miRNA:   3'- gGGGCGuCCUGcGCaGGGACCU----GGGC- -5'
28856 3' -63.2 NC_006146.1 + 127142 0.66 0.634428
Target:  5'- gCUCCGCGuggagcuGGACgGCGUCaugcgcgaccaCCUGG-CCCGg -3'
miRNA:   3'- -GGGGCGU-------CCUG-CGCAG-----------GGACCuGGGC- -5'
28856 3' -63.2 NC_006146.1 + 76105 0.66 0.634428
Target:  5'- cCCCCGgGccucggccuacguGGACGUGgCCCgcaacUGGGCCCu -3'
miRNA:   3'- -GGGGCgU-------------CCUGCGCaGGG-----ACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 140779 0.67 0.625852
Target:  5'- cCCCUGCAuGGGgGCG-CUCUGuGugCCa -3'
miRNA:   3'- -GGGGCGU-CCUgCGCaGGGAC-CugGGc -5'
28856 3' -63.2 NC_006146.1 + 152243 0.67 0.624899
Target:  5'- gCCUGCgaaggccGGGcAUGCGaUCCCUGGcuGCCUGg -3'
miRNA:   3'- gGGGCG-------UCC-UGCGC-AGGGACC--UGGGC- -5'
28856 3' -63.2 NC_006146.1 + 63497 0.67 0.616327
Target:  5'- gUCCCGUgc-ACGCcgcagCCCUGGACCCu -3'
miRNA:   3'- -GGGGCGuccUGCGca---GGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 33267 0.67 0.616327
Target:  5'- gCCCCGCuccGGGugGgGgguggCCCggcUGGGCaCCGc -3'
miRNA:   3'- -GGGGCG---UCCugCgCa----GGG---ACCUG-GGC- -5'
28856 3' -63.2 NC_006146.1 + 33143 0.67 0.616327
Target:  5'- gCCCCGCuccGGGugGgGgguggCCCggcUGGGCaCCGc -3'
miRNA:   3'- -GGGGCG---UCCugCgCa----GGG---ACCUG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.