miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 3' -63.2 NC_006146.1 + 215 0.69 0.495438
Target:  5'- cCCCCGCgacgguccccGGGGCGC--CCCUGGccuccCCCGc -3'
miRNA:   3'- -GGGGCG----------UCCUGCGcaGGGACCu----GGGC- -5'
28856 3' -63.2 NC_006146.1 + 485 0.67 0.597313
Target:  5'- gCCCCGCGGGACcccccccucCGcCCCcGaGGCCCc -3'
miRNA:   3'- -GGGGCGUCCUGc--------GCaGGGaC-CUGGGc -5'
28856 3' -63.2 NC_006146.1 + 827 0.69 0.486534
Target:  5'- cUCCCGCcGGccauccccacGCGCGgCCCcGGGCCCu -3'
miRNA:   3'- -GGGGCGuCC----------UGCGCaGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 1416 0.67 0.597313
Target:  5'- gCCCCGCGGGACcccccccucCGcCCCcGaGGCCCc -3'
miRNA:   3'- -GGGGCGUCCUGc--------GCaGGGaC-CUGGGc -5'
28856 3' -63.2 NC_006146.1 + 1759 0.69 0.486534
Target:  5'- cUCCCGCcGGccauccccacGCGCGgCCCcGGGCCCu -3'
miRNA:   3'- -GGGGCGuCC----------UGCGCaGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 2348 0.67 0.597313
Target:  5'- gCCCCGCGGGACcccccccucCGcCCCcGaGGCCCc -3'
miRNA:   3'- -GGGGCGUCCUGc--------GCaGGGaC-CUGGGc -5'
28856 3' -63.2 NC_006146.1 + 2691 0.69 0.486534
Target:  5'- cUCCCGCcGGccauccccacGCGCGgCCCcGGGCCCu -3'
miRNA:   3'- -GGGGCGuCC----------UGCGCaGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 3280 0.67 0.597313
Target:  5'- gCCCCGCGGGACcccccccucCGcCCCcGaGGCCCc -3'
miRNA:   3'- -GGGGCGUCCUGc--------GCaGGGaC-CUGGGc -5'
28856 3' -63.2 NC_006146.1 + 3623 0.69 0.486534
Target:  5'- cUCCCGCcGGccauccccacGCGCGgCCCcGGGCCCu -3'
miRNA:   3'- -GGGGCGuCC----------UGCGCaGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 5152 0.7 0.443224
Target:  5'- gCCCUGCGaGACGCccugcugaaGUUCCUGGccagGCCCGa -3'
miRNA:   3'- -GGGGCGUcCUGCG---------CAGGGACC----UGGGC- -5'
28856 3' -63.2 NC_006146.1 + 8047 0.66 0.635381
Target:  5'- aCCCGCuGGACcCGgCCCUGGGggugUCUGg -3'
miRNA:   3'- gGGGCGuCCUGcGCaGGGACCU----GGGC- -5'
28856 3' -63.2 NC_006146.1 + 9137 0.67 0.616327
Target:  5'- cCCCCGCccAGG-CGCc-CCCUcGGACCUc -3'
miRNA:   3'- -GGGGCG--UCCuGCGcaGGGA-CCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 13114 0.68 0.522573
Target:  5'- gCCCUGUuuguGGACGgGggcUCCC-GGGCCCa -3'
miRNA:   3'- -GGGGCGu---CCUGCgC---AGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 13495 0.68 0.535434
Target:  5'- aCCCCucucCAGGGCuucagagcccagaaCGUCCCgagaagGGACCCGa -3'
miRNA:   3'- -GGGGc---GUCCUGc-------------GCAGGGa-----CCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 13579 0.66 0.644909
Target:  5'- cCCUCGC-GGACagggGCcUCCCaGGGCCCu -3'
miRNA:   3'- -GGGGCGuCCUG----CGcAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 14264 0.66 0.643956
Target:  5'- uCCCCGUuugAGGcgacagaaugaccGCGCGugcagcgcccugUCCCUGGAgCUGg -3'
miRNA:   3'- -GGGGCG---UCC-------------UGCGC------------AGGGACCUgGGC- -5'
28856 3' -63.2 NC_006146.1 + 14355 0.67 0.606812
Target:  5'- gCCCUGCugguGGGGuCGgGUCCCgGGAUCUc -3'
miRNA:   3'- -GGGGCG----UCCU-GCgCAGGGaCCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 14537 0.66 0.644909
Target:  5'- uCUCCGCGuGcGCauaaugGCGgCCCUGGACCCa -3'
miRNA:   3'- -GGGGCGU-CcUG------CGCaGGGACCUGGGc -5'
28856 3' -63.2 NC_006146.1 + 14566 0.68 0.568034
Target:  5'- -gCCGCuuucGGGGCGUGagccccaUCCC-GGACCCGc -3'
miRNA:   3'- ggGGCG----UCCUGCGC-------AGGGaCCUGGGC- -5'
28856 3' -63.2 NC_006146.1 + 14913 0.69 0.460294
Target:  5'- cCCCCGgAGGugGCGgagCUCUcGGAgCUGc -3'
miRNA:   3'- -GGGGCgUCCugCGCa--GGGA-CCUgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.