Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28856 | 3' | -63.2 | NC_006146.1 | + | 168568 | 0.82 | 0.074701 |
Target: 5'- gUCCCGCGGGgcccgGCGCGUgCCgggGGACCCGg -3' miRNA: 3'- -GGGGCGUCC-----UGCGCAgGGa--CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 169549 | 0.7 | 0.443224 |
Target: 5'- aCCCgaggggcgaGCGGGGgGCuUCCCcgGGGCCCGa -3' miRNA: 3'- gGGG---------CGUCCUgCGcAGGGa-CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 113807 | 0.69 | 0.486534 |
Target: 5'- uCCCCGCuggccAGGACGCGccgCUCgUGGACUa- -3' miRNA: 3'- -GGGGCG-----UCCUGCGCa--GGG-ACCUGGgc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 141889 | 0.66 | 0.682862 |
Target: 5'- gUCCGUgccuAGGAgcgcCGCuGUUCCaGGACCCGg -3' miRNA: 3'- gGGGCG----UCCU----GCG-CAGGGaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 53886 | 0.78 | 0.140896 |
Target: 5'- cCCCCGUAGGGCGUagcccagGUCCa-GGGCCCGc -3' miRNA: 3'- -GGGGCGUCCUGCG-------CAGGgaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 56062 | 0.76 | 0.179041 |
Target: 5'- cUCCCGCGGGAagGCGUCCCaccGGGCCa- -3' miRNA: 3'- -GGGGCGUCCUg-CGCAGGGa--CCUGGgc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 158122 | 0.74 | 0.241395 |
Target: 5'- cCCCUGCAGGGcCGCGUCCa-GG-UCCGg -3' miRNA: 3'- -GGGGCGUCCU-GCGCAGGgaCCuGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 156520 | 0.73 | 0.275831 |
Target: 5'- gCCCggaggggaGCGGGAgGCGagaUCCCgGGACCCGa -3' miRNA: 3'- -GGGg-------CGUCCUgCGC---AGGGaCCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 155324 | 0.71 | 0.355484 |
Target: 5'- cCCUCGCc-GACGCGccuguccUCCCagGGACCCGa -3' miRNA: 3'- -GGGGCGucCUGCGC-------AGGGa-CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 168617 | 0.7 | 0.443224 |
Target: 5'- aCCCgaggggcgaGCGGGGgGCuUCCCcgGGGCCCGa -3' miRNA: 3'- gGGG---------CGUCCUgCGcAGGGa-CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 109027 | 0.7 | 0.434824 |
Target: 5'- aCCCG-AGGGCGCGcCCCcgUGGAgaccucugcCCCGg -3' miRNA: 3'- gGGGCgUCCUGCGCaGGG--ACCU---------GGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 37647 | 0.72 | 0.327698 |
Target: 5'- uUCUCGU-GGACaGCGUCCCUGGGgCUGa -3' miRNA: 3'- -GGGGCGuCCUG-CGCAGGGACCUgGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 169500 | 0.82 | 0.074701 |
Target: 5'- gUCCCGCGGGgcccgGCGCGUgCCgggGGACCCGg -3' miRNA: 3'- -GGGGCGUCC-----UGCGCAgGGa--CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 5152 | 0.7 | 0.443224 |
Target: 5'- gCCCUGCGaGACGCccugcugaaGUUCCUGGccagGCCCGa -3' miRNA: 3'- -GGGGCGUcCUGCG---------CAGGGACC----UGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 170431 | 0.82 | 0.074701 |
Target: 5'- gUCCCGCGGGgcccgGCGCGUgCCgggGGACCCGg -3' miRNA: 3'- -GGGGCGUCC-----UGCGCAgGGa--CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 137949 | 0.72 | 0.314084 |
Target: 5'- gCCCCGUucacgggggAGGAuCGCGgccgggccUCCCggGGGCCCGg -3' miRNA: 3'- -GGGGCG---------UCCU-GCGC--------AGGGa-CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 167684 | 0.7 | 0.443224 |
Target: 5'- aCCCgaggggcgaGCGGGGgGCuUCCCcgGGGCCCGa -3' miRNA: 3'- gGGG---------CGUCCUgCGcAGGGa-CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 123057 | 0.69 | 0.477706 |
Target: 5'- aCgCCGgguccaGGGACGCGUCCUgcgGGGCCa- -3' miRNA: 3'- -GgGGCg-----UCCUGCGCAGGGa--CCUGGgc -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 167636 | 0.81 | 0.093373 |
Target: 5'- gUCCCGCGGGgcccgGCGCGUgCCggGGGCCCGg -3' miRNA: 3'- -GGGGCGUCC-----UGCGCAgGGa-CCUGGGC- -5' |
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28856 | 3' | -63.2 | NC_006146.1 | + | 41607 | 0.76 | 0.196534 |
Target: 5'- gCCCGgGGGGCuG-GUCCgCUGGGCCCGg -3' miRNA: 3'- gGGGCgUCCUG-CgCAGG-GACCUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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