miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 115003 0.66 0.935472
Target:  5'- gCCAuGGCCGUGGagcugguggaGCGGGgagCaggGGg -3'
miRNA:   3'- aGGUuCCGGCACC----------UGCCCaa-GgaaCC- -5'
28856 5' -56.3 NC_006146.1 + 116801 0.66 0.935472
Target:  5'- cUCAAGGgCGUGGugGaGGgcgUCCa-GGa -3'
miRNA:   3'- aGGUUCCgGCACCugC-CCa--AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 28490 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 16178 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 13100 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 19256 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 22334 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 25412 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 105193 0.66 0.930532
Target:  5'- aCCGGGGCCGgGGAgcCGGGggugCCc-GGu -3'
miRNA:   3'- aGGUUCCGGCaCCU--GCCCaa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 13109 0.66 0.930532
Target:  5'- aCCu-GGCCcuguuuGUGGACGGGggcUCCcgGGc -3'
miRNA:   3'- aGGuuCCGG------CACCUGCCCa--AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 100300 0.66 0.930532
Target:  5'- --aGAGGCCGUGGAgGcacaGGUUCCc--- -3'
miRNA:   3'- aggUUCCGGCACCUgC----CCAAGGaacc -5'
28856 5' -56.3 NC_006146.1 + 101027 0.66 0.930532
Target:  5'- aCCAcGGCCGUGGACcuGGGccUCUa--- -3'
miRNA:   3'- aGGUuCCGGCACCUG--CCCa-AGGaacc -5'
28856 5' -56.3 NC_006146.1 + 75249 0.66 0.925363
Target:  5'- aCCGAGGCgggCGUGGggugcACGGGgauggCCgaGGa -3'
miRNA:   3'- aGGUUCCG---GCACC-----UGCCCaa---GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 169136 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 167272 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 168204 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 41845 0.66 0.919963
Target:  5'- aCCcGGGCCGUGGccaGGGgcuaCCggGGc -3'
miRNA:   3'- aGGuUCCGGCACCug-CCCaa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 97870 0.66 0.919963
Target:  5'- cCCcGGGCCGUGGAacgaGGGccugagCCUg-- -3'
miRNA:   3'- aGGuUCCGGCACCUg---CCCaa----GGAacc -5'
28856 5' -56.3 NC_006146.1 + 170068 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 13900 0.66 0.919963
Target:  5'- gCCGAGGCCGcgcgugacuuuuUGGaaggagugGCGGGUgggCCcgGGg -3'
miRNA:   3'- aGGUUCCGGC------------ACC--------UGCCCAa--GGaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.