Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28856 | 5' | -56.3 | NC_006146.1 | + | 115003 | 0.66 | 0.935472 |
Target: 5'- gCCAuGGCCGUGGagcugguggaGCGGGgagCaggGGg -3' miRNA: 3'- aGGUuCCGGCACC----------UGCCCaa-GgaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 124520 | 0.66 | 0.908476 |
Target: 5'- gCCcuGGCgagGGACGGGggCCUgggGGa -3' miRNA: 3'- aGGuuCCGgcaCCUGCCCaaGGAa--CC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 89369 | 0.66 | 0.908476 |
Target: 5'- uUCCGAGGCCcgaggucucGUGGugGGca-CCgaGGg -3' miRNA: 3'- -AGGUUCCGG---------CACCugCCcaaGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 58232 | 0.66 | 0.907878 |
Target: 5'- aCCGGGGgCGUGGACaagggcuauaaaaGGGgcCCggUGGc -3' miRNA: 3'- aGGUUCCgGCACCUG-------------CCCaaGGa-ACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 168204 | 0.66 | 0.919963 |
Target: 5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3' miRNA: 3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 67202 | 0.66 | 0.908476 |
Target: 5'- uUCCAcuGGCCGUGGcCGGucgCC-UGGc -3' miRNA: 3'- -AGGUu-CCGGCACCuGCCcaaGGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 44320 | 0.66 | 0.914334 |
Target: 5'- gCUggGGCCGUGGcagcCGGGggCUUcugcacaggUGGc -3' miRNA: 3'- aGGuuCCGGCACCu---GCCCaaGGA---------ACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 167272 | 0.66 | 0.919963 |
Target: 5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3' miRNA: 3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 45048 | 0.66 | 0.908476 |
Target: 5'- gCCGGGGCCGgcucccuagGGGCGgcugaGGUgCCUcgUGGg -3' miRNA: 3'- aGGUUCCGGCa--------CCUGC-----CCAaGGA--ACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 47507 | 0.66 | 0.910847 |
Target: 5'- cCCAAGGCCGgGGAcuacagcggcaguguCGGGggcgccgCCUcGGu -3' miRNA: 3'- aGGUUCCGGCaCCU---------------GCCCaa-----GGAaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 114332 | 0.66 | 0.913758 |
Target: 5'- gCCc-GGCCGccccugacggaggUGGACGGGggCC-UGGc -3' miRNA: 3'- aGGuuCCGGC-------------ACCUGCCCaaGGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 96895 | 0.66 | 0.914334 |
Target: 5'- cUCCAgcgugAGGCCGUGGugGucaGUUUCcaGGa -3' miRNA: 3'- -AGGU-----UCCGGCACCugCc--CAAGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 116801 | 0.66 | 0.935472 |
Target: 5'- cUCAAGGgCGUGGugGaGGgcgUCCa-GGa -3' miRNA: 3'- aGGUUCCgGCACCugC-CCa--AGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 101027 | 0.66 | 0.930532 |
Target: 5'- aCCAcGGCCGUGGACcuGGGccUCUa--- -3' miRNA: 3'- aGGUuCCGGCACCUG--CCCa-AGGaacc -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 100300 | 0.66 | 0.930532 |
Target: 5'- --aGAGGCCGUGGAgGcacaGGUUCCc--- -3' miRNA: 3'- aggUUCCGGCACCUgC----CCAAGGaacc -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 13109 | 0.66 | 0.930532 |
Target: 5'- aCCu-GGCCcuguuuGUGGACGGGggcUCCcgGGc -3' miRNA: 3'- aGGuuCCGG------CACCUGCCCa--AGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 105193 | 0.66 | 0.930532 |
Target: 5'- aCCGGGGCCGgGGAgcCGGGggugCCc-GGu -3' miRNA: 3'- aGGUUCCGGCaCCU--GCCCaa--GGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 75249 | 0.66 | 0.925363 |
Target: 5'- aCCGAGGCgggCGUGGggugcACGGGgauggCCgaGGa -3' miRNA: 3'- aGGUUCCG---GCACC-----UGCCCaa---GGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 13900 | 0.66 | 0.919963 |
Target: 5'- gCCGAGGCCGcgcgugacuuuuUGGaaggagugGCGGGUgggCCcgGGg -3' miRNA: 3'- aGGUUCCGGC------------ACC--------UGCCCAa--GGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 6472 | 0.66 | 0.914907 |
Target: 5'- aCCAcGGCCcacugcaagaaacaGGAcCGGGUggUCCUUGGa -3' miRNA: 3'- aGGUuCCGGca------------CCU-GCCCA--AGGAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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