miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 13109 0.66 0.930532
Target:  5'- aCCu-GGCCcuguuuGUGGACGGGggcUCCcgGGc -3'
miRNA:   3'- aGGuuCCGG------CACCUGCCCa--AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 100300 0.66 0.930532
Target:  5'- --aGAGGCCGUGGAgGcacaGGUUCCc--- -3'
miRNA:   3'- aggUUCCGGCACCUgC----CCAAGGaacc -5'
28856 5' -56.3 NC_006146.1 + 101027 0.66 0.930532
Target:  5'- aCCAcGGCCGUGGACcuGGGccUCUa--- -3'
miRNA:   3'- aGGUuCCGGCACCUG--CCCa-AGGaacc -5'
28856 5' -56.3 NC_006146.1 + 116801 0.66 0.935472
Target:  5'- cUCAAGGgCGUGGugGaGGgcgUCCa-GGa -3'
miRNA:   3'- aGGUUCCgGCACCugC-CCa--AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 115003 0.66 0.935472
Target:  5'- gCCAuGGCCGUGGagcugguggaGCGGGgagCaggGGg -3'
miRNA:   3'- aGGUuCCGGCACC----------UGCCCaa-GgaaCC- -5'
28856 5' -56.3 NC_006146.1 + 96895 0.66 0.914334
Target:  5'- cUCCAgcgugAGGCCGUGGugGucaGUUUCcaGGa -3'
miRNA:   3'- -AGGU-----UCCGGCACCugCc--CAAGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 114332 0.66 0.913758
Target:  5'- gCCc-GGCCGccccugacggaggUGGACGGGggCC-UGGc -3'
miRNA:   3'- aGGuuCCGGC-------------ACCUGCCCaaGGaACC- -5'
28856 5' -56.3 NC_006146.1 + 47507 0.66 0.910847
Target:  5'- cCCAAGGCCGgGGAcuacagcggcaguguCGGGggcgccgCCUcGGu -3'
miRNA:   3'- aGGUUCCGGCaCCU---------------GCCCaa-----GGAaCC- -5'
28856 5' -56.3 NC_006146.1 + 124520 0.66 0.908476
Target:  5'- gCCcuGGCgagGGACGGGggCCUgggGGa -3'
miRNA:   3'- aGGuuCCGgcaCCUGCCCaaGGAa--CC- -5'
28856 5' -56.3 NC_006146.1 + 89369 0.66 0.908476
Target:  5'- uUCCGAGGCCcgaggucucGUGGugGGca-CCgaGGg -3'
miRNA:   3'- -AGGUUCCGG---------CACCugCCcaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 120570 0.67 0.889554
Target:  5'- gCCGAGGCCGcGGAUGGcaaGUUugaCCU-GGa -3'
miRNA:   3'- aGGUUCCGGCaCCUGCC---CAA---GGAaCC- -5'
28856 5' -56.3 NC_006146.1 + 168339 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 161765 0.67 0.882807
Target:  5'- gUCCGAGggggcGCC-UGGGCGGGggCCUg-- -3'
miRNA:   3'- -AGGUUC-----CGGcACCUGCCCaaGGAacc -5'
28856 5' -56.3 NC_006146.1 + 51217 0.67 0.875845
Target:  5'- aUCCAcgAGGCCGggGuGGCGGGUgaggUUGGu -3'
miRNA:   3'- -AGGU--UCCGGCa-C-CUGCCCAagg-AACC- -5'
28856 5' -56.3 NC_006146.1 + 153516 0.67 0.880741
Target:  5'- cUgGAGGCUGUGGAUGGaGUggggggcguggggcUgCUUGGg -3'
miRNA:   3'- aGgUUCCGGCACCUGCC-CA--------------AgGAACC- -5'
28856 5' -56.3 NC_006146.1 + 41077 0.67 0.889554
Target:  5'- -aCGGGGgCGUGG-CGGGUgggCCgcGGg -3'
miRNA:   3'- agGUUCCgGCACCuGCCCAa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 169271 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 170202 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 167407 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 18863 0.68 0.868674
Target:  5'- gCCGGGGUgGUGGacguGCGGGggCCUc-- -3'
miRNA:   3'- aGGUUCCGgCACC----UGCCCaaGGAacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.