Results 1 - 20 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28856 | 5' | -56.3 | NC_006146.1 | + | 47875 | 1.12 | 0.002335 |
Target: 5'- uUCCAAGGCCGUGGACGGGUUCCUUGGg -3' miRNA: 3'- -AGGUUCCGGCACCUGCCCAAGGAACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 156238 | 0.82 | 0.194829 |
Target: 5'- cCCucGGCCGUGGACGGGgugCCgUGGu -3' miRNA: 3'- aGGuuCCGGCACCUGCCCaa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 6428 | 0.74 | 0.532432 |
Target: 5'- cCCAGGGCCauGUGGGCccuGGGgUCCaUGGg -3' miRNA: 3'- aGGUUCCGG--CACCUG---CCCaAGGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 64909 | 0.72 | 0.641672 |
Target: 5'- --aGGGGUCGUGGAUGGGcUCCagGGu -3' miRNA: 3'- aggUUCCGGCACCUGCCCaAGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 51829 | 0.72 | 0.661715 |
Target: 5'- cCCGGGGCggCGUGGAgGGGggCUcgGGg -3' miRNA: 3'- aGGUUCCG--GCACCUgCCCaaGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 106662 | 0.71 | 0.691587 |
Target: 5'- gUCAGGGCCGUccucuccccgGGcACGGGaUCCcUGGg -3' miRNA: 3'- aGGUUCCGGCA----------CC-UGCCCaAGGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 137039 | 0.71 | 0.691587 |
Target: 5'- --gGAGGCCGgguggGGGCcugGGGUUCCggGGa -3' miRNA: 3'- aggUUCCGGCa----CCUG---CCCAAGGaaCC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 125615 | 0.71 | 0.695543 |
Target: 5'- uUCCAccgaggguggggcauGGGCUGgugagcggGGACGGGUUCCa--- -3' miRNA: 3'- -AGGU---------------UCCGGCa-------CCUGCCCAAGGaacc -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 47677 | 0.71 | 0.70146 |
Target: 5'- gCCAGGGUcuCGUGGAUGGaGga-CUUGGg -3' miRNA: 3'- aGGUUCCG--GCACCUGCC-CaagGAACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 53340 | 0.7 | 0.740306 |
Target: 5'- cCCGGcGGCCGcgGGGCGGcGUgaggUCUUGGc -3' miRNA: 3'- aGGUU-CCGGCa-CCUGCC-CAa---GGAACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 161451 | 0.7 | 0.749812 |
Target: 5'- cCCAAGGCgCGUgGGGCGGGUaggcUGGu -3' miRNA: 3'- aGGUUCCG-GCA-CCUGCCCAaggaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 109994 | 0.7 | 0.749812 |
Target: 5'- aCUAAGGCCG-GGAUGuGGggCCUcagGGc -3' miRNA: 3'- aGGUUCCGGCaCCUGC-CCaaGGAa--CC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135831 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135274 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135181 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135367 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135553 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135738 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135646 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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28856 | 5' | -56.3 | NC_006146.1 | + | 135460 | 0.7 | 0.759219 |
Target: 5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3' miRNA: 3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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