miRNA display CGI


Results 21 - 40 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 136853 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136760 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136668 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135181 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135367 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135460 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135553 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135646 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135738 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135831 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135924 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136017 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136110 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136203 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136296 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136389 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136482 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136575 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 153407 0.7 0.768518
Target:  5'- gCCAAGGgaguucCCGgGGGCGGGUguggcuggCUUUGGa -3'
miRNA:   3'- aGGUUCC------GGCaCCUGCCCAa-------GGAACC- -5'
28856 5' -56.3 NC_006146.1 + 147667 0.69 0.777699
Target:  5'- cUCGGGGCgaGUGGACGGG--CCUgGGa -3'
miRNA:   3'- aGGUUCCGg-CACCUGCCCaaGGAaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.