miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 6472 0.66 0.914907
Target:  5'- aCCAcGGCCcacugcaagaaacaGGAcCGGGUggUCCUUGGa -3'
miRNA:   3'- aGGUuCCGGca------------CCU-GCCCA--AGGAACC- -5'
28856 5' -56.3 NC_006146.1 + 96895 0.66 0.914334
Target:  5'- cUCCAgcgugAGGCCGUGGugGucaGUUUCcaGGa -3'
miRNA:   3'- -AGGU-----UCCGGCACCugCc--CAAGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 44320 0.66 0.914334
Target:  5'- gCUggGGCCGUGGcagcCGGGggCUUcugcacaggUGGc -3'
miRNA:   3'- aGGuuCCGGCACCu---GCCCaaGGA---------ACC- -5'
28856 5' -56.3 NC_006146.1 + 114332 0.66 0.913758
Target:  5'- gCCc-GGCCGccccugacggaggUGGACGGGggCC-UGGc -3'
miRNA:   3'- aGGuuCCGGC-------------ACCUGCCCaaGGaACC- -5'
28856 5' -56.3 NC_006146.1 + 47507 0.66 0.910847
Target:  5'- cCCAAGGCCGgGGAcuacagcggcaguguCGGGggcgccgCCUcGGu -3'
miRNA:   3'- aGGUUCCGGCaCCU---------------GCCCaa-----GGAaCC- -5'
28856 5' -56.3 NC_006146.1 + 89369 0.66 0.908476
Target:  5'- uUCCGAGGCCcgaggucucGUGGugGGca-CCgaGGg -3'
miRNA:   3'- -AGGUUCCGG---------CACCugCCcaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 67202 0.66 0.908476
Target:  5'- uUCCAcuGGCCGUGGcCGGucgCC-UGGc -3'
miRNA:   3'- -AGGUu-CCGGCACCuGCCcaaGGaACC- -5'
28856 5' -56.3 NC_006146.1 + 45048 0.66 0.908476
Target:  5'- gCCGGGGCCGgcucccuagGGGCGgcugaGGUgCCUcgUGGg -3'
miRNA:   3'- aGGUUCCGGCa--------CCUGC-----CCAaGGA--ACC- -5'
28856 5' -56.3 NC_006146.1 + 124520 0.66 0.908476
Target:  5'- gCCcuGGCgagGGACGGGggCCUgggGGa -3'
miRNA:   3'- aGGuuCCGgcaCCUGCCCaaGGAa--CC- -5'
28856 5' -56.3 NC_006146.1 + 58232 0.66 0.907878
Target:  5'- aCCGGGGgCGUGGACaagggcuauaaaaGGGgcCCggUGGc -3'
miRNA:   3'- aGGUUCCgGCACCUG-------------CCCaaGGa-ACC- -5'
28856 5' -56.3 NC_006146.1 + 170202 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 41077 0.67 0.889554
Target:  5'- -aCGGGGgCGUGG-CGGGUgggCCgcGGg -3'
miRNA:   3'- agGUUCCgGCACCuGCCCAa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 169271 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 167407 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 168339 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 120570 0.67 0.889554
Target:  5'- gCCGAGGCCGcGGAUGGcaaGUUugaCCU-GGa -3'
miRNA:   3'- aGGUUCCGGCaCCUGCC---CAA---GGAaCC- -5'
28856 5' -56.3 NC_006146.1 + 161765 0.67 0.882807
Target:  5'- gUCCGAGggggcGCC-UGGGCGGGggCCUg-- -3'
miRNA:   3'- -AGGUUC-----CGGcACCUGCCCaaGGAacc -5'
28856 5' -56.3 NC_006146.1 + 153516 0.67 0.880741
Target:  5'- cUgGAGGCUGUGGAUGGaGUggggggcguggggcUgCUUGGg -3'
miRNA:   3'- aGgUUCCGGCACCUGCC-CA--------------AgGAACC- -5'
28856 5' -56.3 NC_006146.1 + 51217 0.67 0.875845
Target:  5'- aUCCAcgAGGCCGggGuGGCGGGUgaggUUGGu -3'
miRNA:   3'- -AGGU--UCCGGCa-C-CUGCCCAagg-AACC- -5'
28856 5' -56.3 NC_006146.1 + 60956 0.68 0.868674
Target:  5'- aUUGAGGCCcgggGGugGGGggucaCCUUGGu -3'
miRNA:   3'- aGGUUCCGGca--CCugCCCaa---GGAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.