miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 18863 0.68 0.868674
Target:  5'- gCCGGGGUgGUGGacguGCGGGggCCUc-- -3'
miRNA:   3'- aGGUUCCGgCACC----UGCCCaaGGAacc -5'
28856 5' -56.3 NC_006146.1 + 89790 0.68 0.868674
Target:  5'- cCCAuGGCCGUGGACGaGGa--CgaGGc -3'
miRNA:   3'- aGGUuCCGGCACCUGC-CCaagGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 126027 0.68 0.861299
Target:  5'- uUCUGcugcuGGGCCGggagGGACuGGGcucCCUUGGg -3'
miRNA:   3'- -AGGU-----UCCGGCa---CCUG-CCCaa-GGAACC- -5'
28856 5' -56.3 NC_006146.1 + 45513 0.68 0.861299
Target:  5'- gCCAAgacGGCCacGGugGGGgccugggccUCCUUGGg -3'
miRNA:   3'- aGGUU---CCGGcaCCugCCCa--------AGGAACC- -5'
28856 5' -56.3 NC_006146.1 + 34061 0.68 0.853725
Target:  5'- gCCGGGGgucCCGUGGcACGGGg-CCggGGg -3'
miRNA:   3'- aGGUUCC---GGCACC-UGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 14341 0.68 0.845957
Target:  5'- -gCAGGGCCGUugcggcccugcuGGugGGGUcgggUCCcgGGa -3'
miRNA:   3'- agGUUCCGGCA------------CCugCCCA----AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 142453 0.68 0.838003
Target:  5'- uUCUAagcAGGCggUGUGGugGGGcUCCcgUGGa -3'
miRNA:   3'- -AGGU---UCCG--GCACCugCCCaAGGa-ACC- -5'
28856 5' -56.3 NC_006146.1 + 162858 0.69 0.821563
Target:  5'- cCCAGGGCCG-GGuccaGCGGGUgCCa--- -3'
miRNA:   3'- aGGUUCCGGCaCC----UGCCCAaGGaacc -5'
28856 5' -56.3 NC_006146.1 + 157962 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 148728 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 154884 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 151806 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 145651 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 142573 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 169961 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 169029 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 167165 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 168097 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 48623 0.69 0.80446
Target:  5'- gUCGGGuGCCGUGGggGCGGGcUCCgggcGGg -3'
miRNA:   3'- aGGUUC-CGGCACC--UGCCCaAGGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 129860 0.69 0.795679
Target:  5'- cCCAGGGCCGccgcGGACGGGgg----GGa -3'
miRNA:   3'- aGGUUCCGGCa---CCUGCCCaaggaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.