miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 6428 0.74 0.532432
Target:  5'- cCCAGGGCCauGUGGGCccuGGGgUCCaUGGg -3'
miRNA:   3'- aGGUUCCGG--CACCUG---CCCaAGGaACC- -5'
28856 5' -56.3 NC_006146.1 + 6472 0.66 0.914907
Target:  5'- aCCAcGGCCcacugcaagaaacaGGAcCGGGUggUCCUUGGa -3'
miRNA:   3'- aGGUuCCGGca------------CCU-GCCCA--AGGAACC- -5'
28856 5' -56.3 NC_006146.1 + 13100 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 13109 0.66 0.930532
Target:  5'- aCCu-GGCCcuguuuGUGGACGGGggcUCCcgGGc -3'
miRNA:   3'- aGGuuCCGG------CACCUGCCCa--AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 13900 0.66 0.919963
Target:  5'- gCCGAGGCCGcgcgugacuuuuUGGaaggagugGCGGGUgggCCcgGGg -3'
miRNA:   3'- aGGUUCCGGC------------ACC--------UGCCCAa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 14341 0.68 0.845957
Target:  5'- -gCAGGGCCGUugcggcccugcuGGugGGGUcgggUCCcgGGa -3'
miRNA:   3'- agGUUCCGGCA------------CCugCCCA----AGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 16178 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 18863 0.68 0.868674
Target:  5'- gCCGGGGUgGUGGacguGCGGGggCCUc-- -3'
miRNA:   3'- aGGUUCCGgCACC----UGCCCaaGGAacc -5'
28856 5' -56.3 NC_006146.1 + 19256 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 22334 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 25412 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 28490 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 34061 0.68 0.853725
Target:  5'- gCCGGGGgucCCGUGGcACGGGg-CCggGGg -3'
miRNA:   3'- aGGUUCC---GGCACC-UGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 41077 0.67 0.889554
Target:  5'- -aCGGGGgCGUGG-CGGGUgggCCgcGGg -3'
miRNA:   3'- agGUUCCgGCACCuGCCCAa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 41845 0.66 0.919963
Target:  5'- aCCcGGGCCGUGGccaGGGgcuaCCggGGc -3'
miRNA:   3'- aGGuUCCGGCACCug-CCCaa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 43457 0.69 0.795679
Target:  5'- aCCAGGGuCCGaaGGACGGGacCCacuggUGGa -3'
miRNA:   3'- aGGUUCC-GGCa-CCUGCCCaaGGa----ACC- -5'
28856 5' -56.3 NC_006146.1 + 44320 0.66 0.914334
Target:  5'- gCUggGGCCGUGGcagcCGGGggCUUcugcacaggUGGc -3'
miRNA:   3'- aGGuuCCGGCACCu---GCCCaaGGA---------ACC- -5'
28856 5' -56.3 NC_006146.1 + 45048 0.66 0.908476
Target:  5'- gCCGGGGCCGgcucccuagGGGCGgcugaGGUgCCUcgUGGg -3'
miRNA:   3'- aGGUUCCGGCa--------CCUGC-----CCAaGGA--ACC- -5'
28856 5' -56.3 NC_006146.1 + 45513 0.68 0.861299
Target:  5'- gCCAAgacGGCCacGGugGGGgccugggccUCCUUGGg -3'
miRNA:   3'- aGGUU---CCGGcaCCugCCCa--------AGGAACC- -5'
28856 5' -56.3 NC_006146.1 + 47507 0.66 0.910847
Target:  5'- cCCAAGGCCGgGGAcuacagcggcaguguCGGGggcgccgCCUcGGu -3'
miRNA:   3'- aGGUUCCGGCaCCU---------------GCCCaa-----GGAaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.