miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 47677 0.71 0.70146
Target:  5'- gCCAGGGUcuCGUGGAUGGaGga-CUUGGg -3'
miRNA:   3'- aGGUUCCG--GCACCUGCC-CaagGAACC- -5'
28856 5' -56.3 NC_006146.1 + 47875 1.12 0.002335
Target:  5'- uUCCAAGGCCGUGGACGGGUUCCUUGGg -3'
miRNA:   3'- -AGGUUCCGGCACCUGCCCAAGGAACC- -5'
28856 5' -56.3 NC_006146.1 + 48623 0.69 0.80446
Target:  5'- gUCGGGuGCCGUGGggGCGGGcUCCgggcGGg -3'
miRNA:   3'- aGGUUC-CGGCACC--UGCCCaAGGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 51217 0.67 0.875845
Target:  5'- aUCCAcgAGGCCGggGuGGCGGGUgaggUUGGu -3'
miRNA:   3'- -AGGU--UCCGGCa-C-CUGCCCAagg-AACC- -5'
28856 5' -56.3 NC_006146.1 + 51829 0.72 0.661715
Target:  5'- cCCGGGGCggCGUGGAgGGGggCUcgGGg -3'
miRNA:   3'- aGGUUCCG--GCACCUgCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 53340 0.7 0.740306
Target:  5'- cCCGGcGGCCGcgGGGCGGcGUgaggUCUUGGc -3'
miRNA:   3'- aGGUU-CCGGCa-CCUGCC-CAa---GGAACC- -5'
28856 5' -56.3 NC_006146.1 + 58232 0.66 0.907878
Target:  5'- aCCGGGGgCGUGGACaagggcuauaaaaGGGgcCCggUGGc -3'
miRNA:   3'- aGGUUCCgGCACCUG-------------CCCaaGGa-ACC- -5'
28856 5' -56.3 NC_006146.1 + 60956 0.68 0.868674
Target:  5'- aUUGAGGCCcgggGGugGGGggucaCCUUGGu -3'
miRNA:   3'- aGGUUCCGGca--CCugCCCaa---GGAACC- -5'
28856 5' -56.3 NC_006146.1 + 64909 0.72 0.641672
Target:  5'- --aGGGGUCGUGGAUGGGcUCCagGGu -3'
miRNA:   3'- aggUUCCGGCACCUGCCCaAGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 67202 0.66 0.908476
Target:  5'- uUCCAcuGGCCGUGGcCGGucgCC-UGGc -3'
miRNA:   3'- -AGGUu-CCGGCACCuGCCcaaGGaACC- -5'
28856 5' -56.3 NC_006146.1 + 75249 0.66 0.925363
Target:  5'- aCCGAGGCgggCGUGGggugcACGGGgauggCCgaGGa -3'
miRNA:   3'- aGGUUCCG---GCACC-----UGCCCaa---GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 89369 0.66 0.908476
Target:  5'- uUCCGAGGCCcgaggucucGUGGugGGca-CCgaGGg -3'
miRNA:   3'- -AGGUUCCGG---------CACCugCCcaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 89790 0.68 0.868674
Target:  5'- cCCAuGGCCGUGGACGaGGa--CgaGGc -3'
miRNA:   3'- aGGUuCCGGCACCUGC-CCaagGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 96895 0.66 0.914334
Target:  5'- cUCCAgcgugAGGCCGUGGugGucaGUUUCcaGGa -3'
miRNA:   3'- -AGGU-----UCCGGCACCugCc--CAAGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 97870 0.66 0.919963
Target:  5'- cCCcGGGCCGUGGAacgaGGGccugagCCUg-- -3'
miRNA:   3'- aGGuUCCGGCACCUg---CCCaa----GGAacc -5'
28856 5' -56.3 NC_006146.1 + 100300 0.66 0.930532
Target:  5'- --aGAGGCCGUGGAgGcacaGGUUCCc--- -3'
miRNA:   3'- aggUUCCGGCACCUgC----CCAAGGaacc -5'
28856 5' -56.3 NC_006146.1 + 101027 0.66 0.930532
Target:  5'- aCCAcGGCCGUGGACcuGGGccUCUa--- -3'
miRNA:   3'- aGGUuCCGGCACCUG--CCCa-AGGaacc -5'
28856 5' -56.3 NC_006146.1 + 105193 0.66 0.930532
Target:  5'- aCCGGGGCCGgGGAgcCGGGggugCCc-GGu -3'
miRNA:   3'- aGGUUCCGGCaCCU--GCCCaa--GGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 106662 0.71 0.691587
Target:  5'- gUCAGGGCCGUccucuccccgGGcACGGGaUCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCA----------CC-UGCCCaAGGaACC- -5'
28856 5' -56.3 NC_006146.1 + 109994 0.7 0.749812
Target:  5'- aCUAAGGCCG-GGAUGuGGggCCUcagGGc -3'
miRNA:   3'- aGGUUCCGGCaCCUGC-CCaaGGAa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.