miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 170202 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 170068 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 169961 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 169271 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 169136 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 169029 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 168339 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 168204 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 168097 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 167407 0.67 0.889554
Target:  5'- gCCGGGGCC-UGG-CGGGggCCagcgcgGGg -3'
miRNA:   3'- aGGUUCCGGcACCuGCCCaaGGaa----CC- -5'
28856 5' -56.3 NC_006146.1 + 167272 0.66 0.919963
Target:  5'- cCCGGGGCCGcGcGugGGGauggCCggcgGGa -3'
miRNA:   3'- aGGUUCCGGCaC-CugCCCaa--GGaa--CC- -5'
28856 5' -56.3 NC_006146.1 + 167165 0.69 0.81309
Target:  5'- gCCAGGGCCuucgGGACGGGaggCCg--- -3'
miRNA:   3'- aGGUUCCGGca--CCUGCCCaa-GGaacc -5'
28856 5' -56.3 NC_006146.1 + 162858 0.69 0.821563
Target:  5'- cCCAGGGCCG-GGuccaGCGGGUgCCa--- -3'
miRNA:   3'- aGGUUCCGGCaCC----UGCCCAaGGaacc -5'
28856 5' -56.3 NC_006146.1 + 161765 0.67 0.882807
Target:  5'- gUCCGAGggggcGCC-UGGGCGGGggCCUg-- -3'
miRNA:   3'- -AGGUUC-----CGGcACCUGCCCaaGGAacc -5'
28856 5' -56.3 NC_006146.1 + 161451 0.7 0.749812
Target:  5'- cCCAAGGCgCGUgGGGCGGGUaggcUGGu -3'
miRNA:   3'- aGGUUCCG-GCA-CCUGCCCAaggaACC- -5'
28856 5' -56.3 NC_006146.1 + 157962 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 156900 0.69 0.777699
Target:  5'- cUCGGGGCgaGUGGACGGG--CCUgGGa -3'
miRNA:   3'- aGGUUCCGg-CACCUGCCCaaGGAaCC- -5'
28856 5' -56.3 NC_006146.1 + 156238 0.82 0.194829
Target:  5'- cCCucGGCCGUGGACGGGgugCCgUGGu -3'
miRNA:   3'- aGGuuCCGGCACCUGCCCaa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 154884 0.69 0.821563
Target:  5'- cCCAAGGCCaccGGGCGGGg-CCagGGc -3'
miRNA:   3'- aGGUUCCGGca-CCUGCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 153822 0.69 0.777699
Target:  5'- cUCGGGGCgaGUGGACGGG--CCUgGGa -3'
miRNA:   3'- aGGUUCCGg-CACCUGCCCaaGGAaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.