miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28856 5' -56.3 NC_006146.1 + 156238 0.82 0.194829
Target:  5'- cCCucGGCCGUGGACGGGgugCCgUGGu -3'
miRNA:   3'- aGGuuCCGGCACCUGCCCaa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136203 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136389 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 28490 0.66 0.930532
Target:  5'- cCCAGGGUCGccaGGCGGGguccggCCUcuccUGGg -3'
miRNA:   3'- aGGUUCCGGCac-CUGCCCaa----GGA----ACC- -5'
28856 5' -56.3 NC_006146.1 + 53340 0.7 0.740306
Target:  5'- cCCGGcGGCCGcgGGGCGGcGUgaggUCUUGGc -3'
miRNA:   3'- aGGUU-CCGGCa-CCUGCC-CAa---GGAACC- -5'
28856 5' -56.3 NC_006146.1 + 109994 0.7 0.749812
Target:  5'- aCUAAGGCCG-GGAUGuGGggCCUcagGGc -3'
miRNA:   3'- aGGUUCCGGCaCCUGC-CCaaGGAa--CC- -5'
28856 5' -56.3 NC_006146.1 + 135274 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135367 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135646 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136110 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135831 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 135553 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 64909 0.72 0.641672
Target:  5'- --aGGGGUCGUGGAUGGGcUCCagGGu -3'
miRNA:   3'- aggUUCCGGCACCUGCCCaAGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 135924 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 51829 0.72 0.661715
Target:  5'- cCCGGGGCggCGUGGAgGGGggCUcgGGg -3'
miRNA:   3'- aGGUUCCG--GCACCUgCCCaaGGaaCC- -5'
28856 5' -56.3 NC_006146.1 + 135460 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136017 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 136296 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5'
28856 5' -56.3 NC_006146.1 + 47677 0.71 0.70146
Target:  5'- gCCAGGGUcuCGUGGAUGGaGga-CUUGGg -3'
miRNA:   3'- aGGUUCCG--GCACCUGCC-CaagGAACC- -5'
28856 5' -56.3 NC_006146.1 + 135181 0.7 0.759219
Target:  5'- cUCGGGGCCGgGGGcCGGGUgcCCcUGGg -3'
miRNA:   3'- aGGUUCCGGCaCCU-GCCCAa-GGaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.