miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 146241 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 145269 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 143163 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 142191 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 139535 0.66 0.873071
Target:  5'- uAUGGGGGCcaagGGGGCU--GCGUGugUu -3'
miRNA:   3'- -UGCCCUCGa---CUCCGAcuUGCACugGu -5'
28857 3' -57.1 NC_006146.1 + 139129 0.7 0.685656
Target:  5'- uUGGGGGCUGuGGGCcGAACGggGGCUc -3'
miRNA:   3'- uGCCCUCGAC-UCCGaCUUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 138893 0.66 0.88708
Target:  5'- cUGGGAGU--AGGCUGAG-GUGACg- -3'
miRNA:   3'- uGCCCUCGacUCCGACUUgCACUGgu -5'
28857 3' -57.1 NC_006146.1 + 138740 0.69 0.744701
Target:  5'- uCGGGuGGCUGA-GCUGAGCGgccuGCCAc -3'
miRNA:   3'- uGCCC-UCGACUcCGACUUGCac--UGGU- -5'
28857 3' -57.1 NC_006146.1 + 137846 0.69 0.73505
Target:  5'- -gGGGGGCUcGGGGUgggUGGGCGUGuCCc -3'
miRNA:   3'- ugCCCUCGA-CUCCG---ACUUGCACuGGu -5'
28857 3' -57.1 NC_006146.1 + 131612 0.67 0.850485
Target:  5'- gUGGGGGCUGuGGUagugggggUGAugGUaguGGCCGg -3'
miRNA:   3'- uGCCCUCGACuCCG--------ACUugCA---CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 128880 0.66 0.880184
Target:  5'- -aGGGGGCgGAGGCgggcccGAACGcgGGCUu -3'
miRNA:   3'- ugCCCUCGaCUCCGa-----CUUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 127722 0.66 0.865747
Target:  5'- cGCGaGGAGCUGAuggGGCUGGGcCGgagaGCCu -3'
miRNA:   3'- -UGC-CCUCGACU---CCGACUU-GCac--UGGu -5'
28857 3' -57.1 NC_006146.1 + 127146 0.67 0.817688
Target:  5'- cGCGuGGAGCUGGacGGCgucauGCGcGACCAc -3'
miRNA:   3'- -UGC-CCUCGACU--CCGacu--UGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 123491 0.75 0.380707
Target:  5'- -gGaGGAGCUGAGGCUGGcCcUGGCCAc -3'
miRNA:   3'- ugC-CCUCGACUCCGACUuGcACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 120539 0.66 0.858216
Target:  5'- gGCGGGAcuGCUGgccaagauccccAGGCUGGcCGaGGCCGc -3'
miRNA:   3'- -UGCCCU--CGAC------------UCCGACUuGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 118245 0.71 0.594686
Target:  5'- -aGGGGGC-GAGGCUGGACGcccucaUGcGCCAg -3'
miRNA:   3'- ugCCCUCGaCUCCGACUUGC------AC-UGGU- -5'
28857 3' -57.1 NC_006146.1 + 118017 0.66 0.873071
Target:  5'- uGCGGG-GCUcGGGGCgc-GCGagGACCAc -3'
miRNA:   3'- -UGCCCuCGA-CUCCGacuUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 115550 0.71 0.625033
Target:  5'- cGCGGuGGCgGGGGCUGGAgGcGACCGc -3'
miRNA:   3'- -UGCCcUCGaCUCCGACUUgCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 112110 0.71 0.604784
Target:  5'- uCGGGGGUgGAGGUggugcUGGugGUGGCCu -3'
miRNA:   3'- uGCCCUCGaCUCCG-----ACUugCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 108857 0.68 0.773039
Target:  5'- gAUGGGAacGCUGAcGGCUGGaauGCGgcagaGGCCGa -3'
miRNA:   3'- -UGCCCU--CGACU-CCGACU---UGCa----CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.