miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 152397 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 151425 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 142191 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 138893 0.66 0.88708
Target:  5'- cUGGGAGU--AGGCUGAG-GUGACg- -3'
miRNA:   3'- uGCCCUCGacUCCGACUUgCACUGgu -5'
28857 3' -57.1 NC_006146.1 + 143163 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 88592 0.79 0.247139
Target:  5'- gUGGGGGCUGGGGCUGu-UGUGGCUg -3'
miRNA:   3'- uGCCCUCGACUCCGACuuGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 47643 1.07 0.00309
Target:  5'- uACGGGAGCUGAGGCUGAACGUGACCAc -3'
miRNA:   3'- -UGCCCUCGACUCCGACUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 42260 0.67 0.817688
Target:  5'- cGCGaGGAGCUGGcucaGCUGGGCGacACCGg -3'
miRNA:   3'- -UGC-CCUCGACUc---CGACUUGCacUGGU- -5'
28857 3' -57.1 NC_006146.1 + 81646 0.67 0.809057
Target:  5'- cCGGGAcGUUGGGGCUcgGAGgGUG-CCGg -3'
miRNA:   3'- uGCCCU-CGACUCCGA--CUUgCACuGGU- -5'
28857 3' -57.1 NC_006146.1 + 29598 0.67 0.809057
Target:  5'- cCGGGGGCUcagccAGGCUGAACcc-GCCAa -3'
miRNA:   3'- uGCCCUCGAc----UCCGACUUGcacUGGU- -5'
28857 3' -57.1 NC_006146.1 + 108857 0.68 0.773039
Target:  5'- gAUGGGAacGCUGAcGGCUGGaauGCGgcagaGGCCGa -3'
miRNA:   3'- -UGCCCU--CGACU-CCGACU---UGCa----CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 138740 0.69 0.744701
Target:  5'- uCGGGuGGCUGA-GCUGAGCGgccuGCCAc -3'
miRNA:   3'- uGCCC-UCGACUcCGACUUGCac--UGGU- -5'
28857 3' -57.1 NC_006146.1 + 39972 0.67 0.841757
Target:  5'- -gGGGAaggagagGCUGAGGCUGcuGCGgcccguagUGGCCGg -3'
miRNA:   3'- ugCCCU-------CGACUCCGACu-UGC--------ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 49078 0.67 0.850485
Target:  5'- -aGGaGGGCUGAGGCUccGGcUGUGGCuCAg -3'
miRNA:   3'- ugCC-CUCGACUCCGA--CUuGCACUG-GU- -5'
28857 3' -57.1 NC_006146.1 + 70710 0.67 0.850485
Target:  5'- aACGGGAGCUcAGGagGAGCGgggGGCUu -3'
miRNA:   3'- -UGCCCUCGAcUCCgaCUUGCa--CUGGu -5'
28857 3' -57.1 NC_006146.1 + 60283 0.67 0.834448
Target:  5'- aGCGGGAGUuugcgGAGcuGCUGAGCuggGACCc -3'
miRNA:   3'- -UGCCCUCGa----CUC--CGACUUGca-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 14109 0.66 0.873071
Target:  5'- gGCGGGAuGUcGGGGCUGcuGGCGgcGGCCu -3'
miRNA:   3'- -UGCCCU-CGaCUCCGAC--UUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 88863 0.73 0.52511
Target:  5'- gGCGGGGcCUGGGGCUGu-UGUGGCUg -3'
miRNA:   3'- -UGCCCUcGACUCCGACuuGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 39874 0.74 0.431823
Target:  5'- cCGGGggaggaGGCUGAGGCUGAGCG--GCCu -3'
miRNA:   3'- uGCCC------UCGACUCCGACUUGCacUGGu -5'
28857 3' -57.1 NC_006146.1 + 123491 0.75 0.380707
Target:  5'- -gGaGGAGCUGAGGCUGGcCcUGGCCAc -3'
miRNA:   3'- ugC-CCUCGACUCCGACUuGcACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.