miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 148347 0.66 0.88708
Target:  5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3'
miRNA:   3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 49078 0.67 0.850485
Target:  5'- -aGGaGGGCUGAGGCUccGGcUGUGGCuCAg -3'
miRNA:   3'- ugCC-CUCGACUCCGA--CUuGCACUG-GU- -5'
28857 3' -57.1 NC_006146.1 + 39972 0.67 0.841757
Target:  5'- -gGGGAaggagagGCUGAGGCUGcuGCGgcccguagUGGCCGg -3'
miRNA:   3'- ugCCCU-------CGACUCCGACu-UGC--------ACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 43628 0.72 0.554628
Target:  5'- -aGGGAGUgGGcGGCgGGGCGUGGCCGc -3'
miRNA:   3'- ugCCCUCGaCU-CCGaCUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 20198 0.71 0.584615
Target:  5'- cCGGGGGCgcagGAGGCUGGGCaUGuACUg -3'
miRNA:   3'- uGCCCUCGa---CUCCGACUUGcAC-UGGu -5'
28857 3' -57.1 NC_006146.1 + 118245 0.71 0.594686
Target:  5'- -aGGGGGC-GAGGCUGGACGcccucaUGcGCCAg -3'
miRNA:   3'- ugCCCUCGaCUCCGACUUGC------AC-UGGU- -5'
28857 3' -57.1 NC_006146.1 + 348 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 1279 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 2211 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 3143 0.71 0.594686
Target:  5'- aACGGGAGCaGAGGgaGGGCGgcGACa- -3'
miRNA:   3'- -UGCCCUCGaCUCCgaCUUGCa-CUGgu -5'
28857 3' -57.1 NC_006146.1 + 76404 0.71 0.594686
Target:  5'- cCGGGGGCgccGAcGGCg--GCGUGACCAu -3'
miRNA:   3'- uGCCCUCGa--CU-CCGacuUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 115550 0.71 0.625033
Target:  5'- cGCGGuGGCgGGGGCUGGAgGcGACCGc -3'
miRNA:   3'- -UGCCcUCGaCUCCGACUUgCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 43985 0.7 0.665533
Target:  5'- aGCGGGAGagGAGGCUGAGua-GGCCGg -3'
miRNA:   3'- -UGCCCUCgaCUCCGACUUgcaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 138740 0.69 0.744701
Target:  5'- uCGGGuGGCUGA-GCUGAGCGgccuGCCAc -3'
miRNA:   3'- uGCCC-UCGACUcCGACUUGCac--UGGU- -5'
28857 3' -57.1 NC_006146.1 + 108857 0.68 0.773039
Target:  5'- gAUGGGAacGCUGAcGGCUGGaauGCGgcagaGGCCGa -3'
miRNA:   3'- -UGCCCU--CGACU-CCGACU---UGCa----CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 29598 0.67 0.809057
Target:  5'- cCGGGGGCUcagccAGGCUGAACcc-GCCAa -3'
miRNA:   3'- uGCCCUCGAc----UCCGACUUGcacUGGU- -5'
28857 3' -57.1 NC_006146.1 + 81646 0.67 0.809057
Target:  5'- cCGGGAcGUUGGGGCUcgGAGgGUG-CCGg -3'
miRNA:   3'- uGCCCU-CGACUCCGA--CUUgCACuGGU- -5'
28857 3' -57.1 NC_006146.1 + 42260 0.67 0.817688
Target:  5'- cGCGaGGAGCUGGcucaGCUGGGCGacACCGg -3'
miRNA:   3'- -UGC-CCUCGACUc---CGACUUGCacUGGU- -5'
28857 3' -57.1 NC_006146.1 + 36658 0.67 0.834448
Target:  5'- cGCGGGGGUucucUGAGGCUacAUG-GGCCu -3'
miRNA:   3'- -UGCCCUCG----ACUCCGAcuUGCaCUGGu -5'
28857 3' -57.1 NC_006146.1 + 60283 0.67 0.834448
Target:  5'- aGCGGGAGUuugcgGAGcuGCUGAGCuggGACCc -3'
miRNA:   3'- -UGCCCUCGa----CUC--CGACUUGca-CUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.