miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 3' -57.1 NC_006146.1 + 149319 0.66 0.880184
Target:  5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3'
miRNA:   3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5'
28857 3' -57.1 NC_006146.1 + 170582 0.66 0.873071
Target:  5'- cCGGGAGaaUGAcaGCUGGGCGUGGCgAg -3'
miRNA:   3'- uGCCCUCg-ACUc-CGACUUGCACUGgU- -5'
28857 3' -57.1 NC_006146.1 + 50608 0.66 0.873071
Target:  5'- -aGGGc-----GGCUGAGCGUGACCGg -3'
miRNA:   3'- ugCCCucgacuCCGACUUGCACUGGU- -5'
28857 3' -57.1 NC_006146.1 + 118017 0.66 0.873071
Target:  5'- uGCGGG-GCUcGGGGCgc-GCGagGACCAc -3'
miRNA:   3'- -UGCCCuCGA-CUCCGacuUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 139535 0.66 0.873071
Target:  5'- uAUGGGGGCcaagGGGGCU--GCGUGugUu -3'
miRNA:   3'- -UGCCCUCGa---CUCCGAcuUGCACugGu -5'
28857 3' -57.1 NC_006146.1 + 14109 0.66 0.873071
Target:  5'- gGCGGGAuGUcGGGGCUGcuGGCGgcGGCCu -3'
miRNA:   3'- -UGCCCU-CGaCUCCGAC--UUGCa-CUGGu -5'
28857 3' -57.1 NC_006146.1 + 127722 0.66 0.865747
Target:  5'- cGCGaGGAGCUGAuggGGCUGGGcCGgagaGCCu -3'
miRNA:   3'- -UGC-CCUCGACU---CCGACUU-GCac--UGGu -5'
28857 3' -57.1 NC_006146.1 + 166879 0.66 0.865747
Target:  5'- -gGGGAGCgGAgGGCgaggagGAGCGUGAgUg -3'
miRNA:   3'- ugCCCUCGaCU-CCGa-----CUUGCACUgGu -5'
28857 3' -57.1 NC_006146.1 + 92473 0.66 0.865747
Target:  5'- gGCGGGuauauguGCccggGGGGUUGAAgGUGGCuCAg -3'
miRNA:   3'- -UGCCCu------CGa---CUCCGACUUgCACUG-GU- -5'
28857 3' -57.1 NC_006146.1 + 56275 0.66 0.865747
Target:  5'- -gGGGAGCgagGAGGCcaGGACGU--CCAg -3'
miRNA:   3'- ugCCCUCGa--CUCCGa-CUUGCAcuGGU- -5'
28857 3' -57.1 NC_006146.1 + 71613 0.66 0.865747
Target:  5'- -gGGGuGaCUGAGGUUGAAU-UGACCc -3'
miRNA:   3'- ugCCCuC-GACUCCGACUUGcACUGGu -5'
28857 3' -57.1 NC_006146.1 + 120539 0.66 0.858216
Target:  5'- gGCGGGAcuGCUGgccaagauccccAGGCUGGcCGaGGCCGc -3'
miRNA:   3'- -UGCCCU--CGAC------------UCCGACUuGCaCUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51688 0.66 0.858216
Target:  5'- gACGGG-GCgGGGGCUGAuCGUccuCCGu -3'
miRNA:   3'- -UGCCCuCGaCUCCGACUuGCAcu-GGU- -5'
28857 3' -57.1 NC_006146.1 + 13882 0.67 0.850485
Target:  5'- aGCGGGAuagaguggacgGCcGAGGCcGcGCGUGACUu -3'
miRNA:   3'- -UGCCCU-----------CGaCUCCGaCuUGCACUGGu -5'
28857 3' -57.1 NC_006146.1 + 70710 0.67 0.850485
Target:  5'- aACGGGAGCUcAGGagGAGCGgggGGCUu -3'
miRNA:   3'- -UGCCCUCGAcUCCgaCUUGCa--CUGGu -5'
28857 3' -57.1 NC_006146.1 + 49078 0.67 0.850485
Target:  5'- -aGGaGGGCUGAGGCUccGGcUGUGGCuCAg -3'
miRNA:   3'- ugCC-CUCGACUCCGA--CUuGCACUG-GU- -5'
28857 3' -57.1 NC_006146.1 + 131612 0.67 0.850485
Target:  5'- gUGGGGGCUGuGGUagugggggUGAugGUaguGGCCGg -3'
miRNA:   3'- uGCCCUCGACuCCG--------ACUugCA---CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 152028 0.67 0.850485
Target:  5'- gUGGGGGCUGAGGCccccGcACGUccACCAc -3'
miRNA:   3'- uGCCCUCGACUCCGa---CuUGCAc-UGGU- -5'
28857 3' -57.1 NC_006146.1 + 67035 0.67 0.850485
Target:  5'- cCGGGAGCcGAcagucGGCcgGGACGgaGACCAc -3'
miRNA:   3'- uGCCCUCGaCU-----CCGa-CUUGCa-CUGGU- -5'
28857 3' -57.1 NC_006146.1 + 51410 0.67 0.84256
Target:  5'- -aGGGGGCUGAGGaguugGAgugcGCGgGACUAg -3'
miRNA:   3'- ugCCCUCGACUCCga---CU----UGCaCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.