miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 59545 0.68 0.783611
Target:  5'- uCCCAGuuUgUCGCCCUGaUGCCcaccucgGGUUGCg -3'
miRNA:   3'- -GGGUU--GgAGCGGGAC-AUGG-------UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 167023 0.69 0.718278
Target:  5'- gUgGGCCUCGCCgaG-ACCAGCaGCUu -3'
miRNA:   3'- gGgUUGGAGCGGgaCaUGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 10487 0.69 0.718278
Target:  5'- gCCCAcuACCUCGCCCUcUAUC-GCagGCUc -3'
miRNA:   3'- -GGGU--UGGAGCGGGAcAUGGuCGa-CGA- -5'
28857 5' -57.6 NC_006146.1 + 136715 0.69 0.708458
Target:  5'- uCCCuGCCUgGCCCaggGU-CCGGCUGg- -3'
miRNA:   3'- -GGGuUGGAgCGGGa--CAuGGUCGACga -5'
28857 5' -57.6 NC_006146.1 + 143556 0.69 0.728026
Target:  5'- cCCCGGCCUUGCCgCgccACCcGCUGUUu -3'
miRNA:   3'- -GGGUUGGAGCGG-GacaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 27247 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 46789 0.7 0.658587
Target:  5'- -aCAGCCaCGUCUUcUACCAGCUGCg -3'
miRNA:   3'- ggGUUGGaGCGGGAcAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 24273 0.7 0.668636
Target:  5'- aCCCAgGCCUCGugaCCCUG-GCCGGggGCUg -3'
miRNA:   3'- -GGGU-UGGAGC---GGGACaUGGUCgaCGA- -5'
28857 5' -57.6 NC_006146.1 + 103666 0.7 0.668636
Target:  5'- cCCCAGCCUcCGUggcuuCCUGUGCCuGGCcgGCc -3'
miRNA:   3'- -GGGUUGGA-GCG-----GGACAUGG-UCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 68325 0.7 0.62835
Target:  5'- cCCCGACCUgcaCGCUCggcucggACCuGCUGCUg -3'
miRNA:   3'- -GGGUUGGA---GCGGGaca----UGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 127631 0.7 0.648518
Target:  5'- gCCgGACCUccaggcCGCCCUGUGCCucucGGUggGCUa -3'
miRNA:   3'- -GGgUUGGA------GCGGGACAUGG----UCGa-CGA- -5'
28857 5' -57.6 NC_006146.1 + 95036 0.7 0.665624
Target:  5'- uCCCGGCCUCGUCCaccacgaucacguuUGUGguCCagAGCUGCc -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------ACAU--GG--UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 14936 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 18013 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 21091 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 24169 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 115230 0.7 0.648518
Target:  5'- gCCCGugCUgGCcuucaacgccgCCUGgcuCCGGCUGCUg -3'
miRNA:   3'- -GGGUugGAgCG-----------GGACau-GGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 111832 0.71 0.608193
Target:  5'- gCCCAGCaagagcucgUCGCCCUGcgugucgGCCcGCUGCg -3'
miRNA:   3'- -GGGUUGg--------AGCGGGACa------UGGuCGACGa -5'
28857 5' -57.6 NC_006146.1 + 122879 0.71 0.578105
Target:  5'- gCCgAGCCUCGCaCCUc--CCGGUUGCUg -3'
miRNA:   3'- -GGgUUGGAGCG-GGAcauGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 15745 0.72 0.538538
Target:  5'- gCCCAGCaacgUgGCCCUG-GCCcGCUGCUg -3'
miRNA:   3'- -GGGUUGg---AgCGGGACaUGGuCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.