Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28857 | 5' | -57.6 | NC_006146.1 | + | 16269 | 0.67 | 0.839474 |
Target: 5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3' miRNA: 3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 62501 | 0.67 | 0.836239 |
Target: 5'- gCCAgcagcACCUgGCCCUGggg-GGCUGCg -3' miRNA: 3'- gGGU-----UGGAgCGGGACauggUCGACGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 93566 | 0.67 | 0.828025 |
Target: 5'- gCCGGCCUCGUCCUucACCAucagccuggGCaUGCg -3' miRNA: 3'- gGGUUGGAGCGGGAcaUGGU---------CG-ACGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 43318 | 0.67 | 0.823014 |
Target: 5'- aCCCGGCCggcgcggccucggcCGCCCaGgGCCAGCagGCg -3' miRNA: 3'- -GGGUUGGa-------------GCGGGaCaUGGUCGa-CGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 52666 | 0.67 | 0.808491 |
Target: 5'- gUCCAGCCUCGCCCccucguccaggacaUcGU-CCAGCUccggGCg -3' miRNA: 3'- -GGGUUGGAGCGGG--------------A-CAuGGUCGA----CGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 46976 | 0.67 | 0.79708 |
Target: 5'- gCCCGGCCgccgccaggaauugCGCCCgucggACCGGCaGCg -3' miRNA: 3'- -GGGUUGGa-------------GCGGGaca--UGGUCGaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 113692 | 0.67 | 0.819639 |
Target: 5'- gCCCGGCCUCcgGCCCgGggaCGGCgGCg -3' miRNA: 3'- -GGGUUGGAG--CGGGaCaugGUCGaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 74075 | 0.67 | 0.836239 |
Target: 5'- gCCCAACCUgccCGCCC-GUccccACCAGggaagcCUGCa -3' miRNA: 3'- -GGGUUGGA---GCGGGaCA----UGGUC------GACGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 124104 | 0.67 | 0.836239 |
Target: 5'- aCCCAgagGCCuUUGCCCUcGcGCCGGCcgGCc -3' miRNA: 3'- -GGGU---UGG-AGCGGGA-CaUGGUCGa-CGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 27075 | 0.67 | 0.828025 |
Target: 5'- gCCAAUaaUCGUCC-GUACUAGCUGUg -3' miRNA: 3'- gGGUUGg-AGCGGGaCAUGGUCGACGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 85277 | 0.67 | 0.818791 |
Target: 5'- cCCCugucuGCCUCucuggcccuuuGCCCcgGUGCCAGCUuccgaggcgggcgGCUg -3' miRNA: 3'- -GGGu----UGGAG-----------CGGGa-CAUGGUCGA-------------CGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 38051 | 0.67 | 0.818791 |
Target: 5'- cCCCcACCUCuccugugaugagaGgCCUGUACUAagauGCUGCUa -3' miRNA: 3'- -GGGuUGGAG-------------CgGGACAUGGU----CGACGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 124509 | 0.67 | 0.807622 |
Target: 5'- gCCUggUCUCgGCCCUGgcgagggacggggGCCugggggAGCUGCUg -3' miRNA: 3'- -GGGuuGGAG-CGGGACa------------UGG------UCGACGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 138949 | 0.67 | 0.802378 |
Target: 5'- gCCUAACCUgGCCCUG-GCUuuGGCcuUGCc -3' miRNA: 3'- -GGGUUGGAgCGGGACaUGG--UCG--ACGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 101658 | 0.67 | 0.801499 |
Target: 5'- aCCCgGACCUgGCCCUGgggggaaacgggcUACgGGCgGCg -3' miRNA: 3'- -GGG-UUGGAgCGGGAC-------------AUGgUCGaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 28581 | 0.67 | 0.839474 |
Target: 5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3' miRNA: 3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 86365 | 0.66 | 0.852117 |
Target: 5'- gCCCAACCaccugccacgGCgCCUGUACCGGCa--- -3' miRNA: 3'- -GGGUUGGag--------CG-GGACAUGGUCGacga -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 39829 | 0.66 | 0.852117 |
Target: 5'- gCCCGgcgGCCUCGgCCgcacaGUggGCCGGCggggGCUg -3' miRNA: 3'- -GGGU---UGGAGCgGGa----CA--UGGUCGa---CGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 109083 | 0.66 | 0.859769 |
Target: 5'- aCCUucACCcCGCCCgugccGUGCCGGC-GCg -3' miRNA: 3'- -GGGu-UGGaGCGGGa----CAUGGUCGaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 92239 | 0.66 | 0.867222 |
Target: 5'- gCgGGCC-CGgCCUGUGgCuGCUGCUg -3' miRNA: 3'- gGgUUGGaGCgGGACAUgGuCGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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