miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 143556 0.69 0.728026
Target:  5'- cCCCGGCCUUGCCgCgccACCcGCUGUUu -3'
miRNA:   3'- -GGGUUGGAGCGG-GacaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 145738 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 146716 0.66 0.844271
Target:  5'- gCCCAGCCcuccUCuGCCCUGU-CCAcgUGCa -3'
miRNA:   3'- -GGGUUGG----AG-CGGGACAuGGUcgACGa -5'
28857 5' -57.6 NC_006146.1 + 148816 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 150707 0.66 0.844271
Target:  5'- gCCCAGCCUccugCGCCCccgGggGCCcuCUGCa -3'
miRNA:   3'- -GGGUUGGA----GCGGGa--Ca-UGGucGACGa -5'
28857 5' -57.6 NC_006146.1 + 151771 0.66 0.844271
Target:  5'- gUCAGCCUUGCgCCUGc-CCAGUaGCUu -3'
miRNA:   3'- gGGUUGGAGCG-GGACauGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 151894 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 154972 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 158050 0.74 0.445401
Target:  5'- aCCCAGCCUCGCCCcaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa--------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 160190 0.68 0.775385
Target:  5'- gCCCAGauuauCCUCGCCaguCUGUGCUGcCUGCa -3'
miRNA:   3'- -GGGUU-----GGAGCGG---GACAUGGUcGACGa -5'
28857 5' -57.6 NC_006146.1 + 167023 0.69 0.718278
Target:  5'- gUgGGCCUCGCCgaG-ACCAGCaGCUu -3'
miRNA:   3'- gGgUUGGAGCGGgaCaUGGUCGaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.