miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 64564 0.68 0.756753
Target:  5'- aCCCAAUgCUCGCCCgcagGUAUgGGCaGUg -3'
miRNA:   3'- -GGGUUG-GAGCGGGa---CAUGgUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 62501 0.67 0.836239
Target:  5'- gCCAgcagcACCUgGCCCUGggg-GGCUGCg -3'
miRNA:   3'- gGGU-----UGGAgCGGGACauggUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 59545 0.68 0.783611
Target:  5'- uCCCAGuuUgUCGCCCUGaUGCCcaccucgGGUUGCg -3'
miRNA:   3'- -GGGUU--GgAGCGGGAC-AUGG-------UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 52666 0.67 0.808491
Target:  5'- gUCCAGCCUCGCCCccucguccaggacaUcGU-CCAGCUccggGCg -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------A-CAuGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 47677 1.1 0.002013
Target:  5'- gCCCAACCUCGCCCUGUACCAGCUGCUg -3'
miRNA:   3'- -GGGUUGGAGCGGGACAUGGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 46976 0.67 0.79708
Target:  5'- gCCCGGCCgccgccaggaauugCGCCCgucggACCGGCaGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaca--UGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 46789 0.7 0.658587
Target:  5'- -aCAGCCaCGUCUUcUACCAGCUGCg -3'
miRNA:   3'- ggGUUGGaGCGGGAcAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 43318 0.67 0.823014
Target:  5'- aCCCGGCCggcgcggccucggcCGCCCaGgGCCAGCagGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaCaUGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 42900 0.66 0.867222
Target:  5'- gCCGACgCUaggGCCuCUGUcCCGGCUGUc -3'
miRNA:   3'- gGGUUG-GAg--CGG-GACAuGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 41984 0.76 0.344964
Target:  5'- uCCCGGCCUCGaCCCgca--CAGCUGCg -3'
miRNA:   3'- -GGGUUGGAGC-GGGacaugGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 39829 0.66 0.852117
Target:  5'- gCCCGgcgGCCUCGgCCgcacaGUggGCCGGCggggGCUg -3'
miRNA:   3'- -GGGU---UGGAGCgGGa----CA--UGGUCGa---CGA- -5'
28857 5' -57.6 NC_006146.1 + 38051 0.67 0.818791
Target:  5'- cCCCcACCUCuccugugaugagaGgCCUGUACUAagauGCUGCUa -3'
miRNA:   3'- -GGGuUGGAG-------------CgGGACAUGGU----CGACGA- -5'
28857 5' -57.6 NC_006146.1 + 33520 0.66 0.867222
Target:  5'- uCCCGGCCUCccuCCCuagguUGUGCCcGGCUuGCc -3'
miRNA:   3'- -GGGUUGGAGc--GGG-----ACAUGG-UCGA-CGa -5'
28857 5' -57.6 NC_006146.1 + 32760 0.66 0.867222
Target:  5'- aCCCAaaGCCcacaUUGCCCccauccaGCCGGCUGCc -3'
miRNA:   3'- -GGGU--UGG----AGCGGGaca----UGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 28581 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 27247 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5'
28857 5' -57.6 NC_006146.1 + 27075 0.67 0.828025
Target:  5'- gCCAAUaaUCGUCC-GUACUAGCUGUg -3'
miRNA:   3'- gGGUUGg-AGCGGGaCAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 25503 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 24273 0.7 0.668636
Target:  5'- aCCCAgGCCUCGugaCCCUG-GCCGGggGCUg -3'
miRNA:   3'- -GGGU-UGGAGC---GGGACaUGGUCgaCGA- -5'
28857 5' -57.6 NC_006146.1 + 24169 0.7 0.668636
Target:  5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3'
miRNA:   3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.