Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28857 | 5' | -57.6 | NC_006146.1 | + | 22425 | 0.67 | 0.839474 |
Target: 5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3' miRNA: 3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 21091 | 0.7 | 0.668636 |
Target: 5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3' miRNA: 3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 19347 | 0.67 | 0.839474 |
Target: 5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3' miRNA: 3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 18013 | 0.7 | 0.668636 |
Target: 5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3' miRNA: 3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 17597 | 0.66 | 0.874469 |
Target: 5'- -gCGACCUgGCCCgggccugGUGCCuGgaGCa -3' miRNA: 3'- ggGUUGGAgCGGGa------CAUGGuCgaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 16269 | 0.67 | 0.839474 |
Target: 5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3' miRNA: 3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 15745 | 0.72 | 0.538538 |
Target: 5'- gCCCAGCaacgUgGCCCUG-GCCcGCUGCUg -3' miRNA: 3'- -GGGUUGg---AgCGGGACaUGGuCGACGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 14936 | 0.7 | 0.668636 |
Target: 5'- gCCCAucGCCUUGCCCUGcGCCcGggGCc -3' miRNA: 3'- -GGGU--UGGAGCGGGACaUGGuCgaCGa -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 13191 | 0.67 | 0.839474 |
Target: 5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3' miRNA: 3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 10487 | 0.69 | 0.718278 |
Target: 5'- gCCCAcuACCUCGCCCUcUAUC-GCagGCUc -3' miRNA: 3'- -GGGU--UGGAGCGGGAcAUGGuCGa-CGA- -5' |
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28857 | 5' | -57.6 | NC_006146.1 | + | 3155 | 0.68 | 0.775385 |
Target: 5'- aCCCGGCCccugCGCCCUG-AUCgAGCaccUGCg -3' miRNA: 3'- -GGGUUGGa---GCGGGACaUGG-UCG---ACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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