miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 145738 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 124104 0.67 0.836239
Target:  5'- aCCCAgagGCCuUUGCCCUcGcGCCGGCcgGCc -3'
miRNA:   3'- -GGGU---UGG-AGCGGGA-CaUGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 86365 0.66 0.852117
Target:  5'- gCCCAACCaccugccacgGCgCCUGUACCGGCa--- -3'
miRNA:   3'- -GGGUUGGag--------CG-GGACAUGGUCGacga -5'
28857 5' -57.6 NC_006146.1 + 39829 0.66 0.852117
Target:  5'- gCCCGgcgGCCUCGgCCgcacaGUggGCCGGCggggGCUg -3'
miRNA:   3'- -GGGU---UGGAGCgGGa----CA--UGGUCGa---CGA- -5'
28857 5' -57.6 NC_006146.1 + 92239 0.66 0.867222
Target:  5'- gCgGGCC-CGgCCUGUGgCuGCUGCUg -3'
miRNA:   3'- gGgUUGGaGCgGGACAUgGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 138949 0.67 0.802378
Target:  5'- gCCUAACCUgGCCCUG-GCUuuGGCcuUGCc -3'
miRNA:   3'- -GGGUUGGAgCGGGACaUGG--UCG--ACGa -5'
28857 5' -57.6 NC_006146.1 + 101658 0.67 0.801499
Target:  5'- aCCCgGACCUgGCCCUGgggggaaacgggcUACgGGCgGCg -3'
miRNA:   3'- -GGG-UUGGAgCGGGAC-------------AUGgUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 100733 0.68 0.756753
Target:  5'- aCCGGCCUCGCCggccACCAGC-GCc -3'
miRNA:   3'- gGGUUGGAGCGGgacaUGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 151894 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 154972 0.74 0.439151
Target:  5'- aCCCAGCCUCGCCCaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa-------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 158050 0.74 0.445401
Target:  5'- aCCCAGCCUCGCCCcaggcgccuccucggGU-CCGGCcGCc -3'
miRNA:   3'- -GGGUUGGAGCGGGa--------------CAuGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 15745 0.72 0.538538
Target:  5'- gCCCAGCaacgUgGCCCUG-GCCcGCUGCUg -3'
miRNA:   3'- -GGGUUGg---AgCGGGACaUGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 111832 0.71 0.608193
Target:  5'- gCCCAGCaagagcucgUCGCCCUGcgugucgGCCcGCUGCg -3'
miRNA:   3'- -GGGUUGg--------AGCGGGACa------UGGuCGACGa -5'
28857 5' -57.6 NC_006146.1 + 115230 0.7 0.648518
Target:  5'- gCCCGugCUgGCcuucaacgccgCCUGgcuCCGGCUGCUg -3'
miRNA:   3'- -GGGUugGAgCG-----------GGACau-GGUCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 68325 0.7 0.62835
Target:  5'- cCCCGACCUgcaCGCUCggcucggACCuGCUGCUg -3'
miRNA:   3'- -GGGUUGGA---GCGGGaca----UGGuCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 46789 0.7 0.658587
Target:  5'- -aCAGCCaCGUCUUcUACCAGCUGCg -3'
miRNA:   3'- ggGUUGGaGCGGGAcAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 24273 0.7 0.668636
Target:  5'- aCCCAgGCCUCGugaCCCUG-GCCGGggGCUg -3'
miRNA:   3'- -GGGU-UGGAGC---GGGACaUGGUCgaCGA- -5'
28857 5' -57.6 NC_006146.1 + 103666 0.7 0.668636
Target:  5'- cCCCAGCCUcCGUggcuuCCUGUGCCuGGCcgGCc -3'
miRNA:   3'- -GGGUUGGA-GCG-----GGACAUGG-UCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 136715 0.69 0.708458
Target:  5'- uCCCuGCCUgGCCCaggGU-CCGGCUGg- -3'
miRNA:   3'- -GGGuUGGAgCGGGa--CAuGGUCGACga -5'
28857 5' -57.6 NC_006146.1 + 10487 0.69 0.718278
Target:  5'- gCCCAcuACCUCGCCCUcUAUC-GCagGCUc -3'
miRNA:   3'- -GGGU--UGGAGCGGGAcAUGGuCGa-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.