miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28857 5' -57.6 NC_006146.1 + 25503 0.67 0.839474
Target:  5'- gCCCGGCCUCGCuCCgggcgccuccucggGU-UCAGCcGCUg -3'
miRNA:   3'- -GGGUUGGAGCG-GGa-------------CAuGGUCGaCGA- -5'
28857 5' -57.6 NC_006146.1 + 74075 0.67 0.836239
Target:  5'- gCCCAACCUgccCGCCC-GUccccACCAGggaagcCUGCa -3'
miRNA:   3'- -GGGUUGGA---GCGGGaCA----UGGUC------GACGa -5'
28857 5' -57.6 NC_006146.1 + 62501 0.67 0.836239
Target:  5'- gCCAgcagcACCUgGCCCUGggg-GGCUGCg -3'
miRNA:   3'- gGGU-----UGGAgCGGGACauggUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 124104 0.67 0.836239
Target:  5'- aCCCAgagGCCuUUGCCCUcGcGCCGGCcgGCc -3'
miRNA:   3'- -GGGU---UGG-AGCGGGA-CaUGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 27075 0.67 0.828025
Target:  5'- gCCAAUaaUCGUCC-GUACUAGCUGUg -3'
miRNA:   3'- gGGUUGg-AGCGGGaCAUGGUCGACGa -5'
28857 5' -57.6 NC_006146.1 + 93566 0.67 0.828025
Target:  5'- gCCGGCCUCGUCCUucACCAucagccuggGCaUGCg -3'
miRNA:   3'- gGGUUGGAGCGGGAcaUGGU---------CG-ACGa -5'
28857 5' -57.6 NC_006146.1 + 43318 0.67 0.823014
Target:  5'- aCCCGGCCggcgcggccucggcCGCCCaGgGCCAGCagGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaCaUGGUCGa-CGa -5'
28857 5' -57.6 NC_006146.1 + 113692 0.67 0.819639
Target:  5'- gCCCGGCCUCcgGCCCgGggaCGGCgGCg -3'
miRNA:   3'- -GGGUUGGAG--CGGGaCaugGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 85277 0.67 0.818791
Target:  5'- cCCCugucuGCCUCucuggcccuuuGCCCcgGUGCCAGCUuccgaggcgggcgGCUg -3'
miRNA:   3'- -GGGu----UGGAG-----------CGGGa-CAUGGUCGA-------------CGA- -5'
28857 5' -57.6 NC_006146.1 + 38051 0.67 0.818791
Target:  5'- cCCCcACCUCuccugugaugagaGgCCUGUACUAagauGCUGCUa -3'
miRNA:   3'- -GGGuUGGAG-------------CgGGACAUGGU----CGACGA- -5'
28857 5' -57.6 NC_006146.1 + 52666 0.67 0.808491
Target:  5'- gUCCAGCCUCGCCCccucguccaggacaUcGU-CCAGCUccggGCg -3'
miRNA:   3'- -GGGUUGGAGCGGG--------------A-CAuGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 124509 0.67 0.807622
Target:  5'- gCCUggUCUCgGCCCUGgcgagggacggggGCCugggggAGCUGCUg -3'
miRNA:   3'- -GGGuuGGAG-CGGGACa------------UGG------UCGACGA- -5'
28857 5' -57.6 NC_006146.1 + 138949 0.67 0.802378
Target:  5'- gCCUAACCUgGCCCUG-GCUuuGGCcuUGCc -3'
miRNA:   3'- -GGGUUGGAgCGGGACaUGG--UCG--ACGa -5'
28857 5' -57.6 NC_006146.1 + 101658 0.67 0.801499
Target:  5'- aCCCgGACCUgGCCCUGgggggaaacgggcUACgGGCgGCg -3'
miRNA:   3'- -GGG-UUGGAgCGGGAC-------------AUGgUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 46976 0.67 0.79708
Target:  5'- gCCCGGCCgccgccaggaauugCGCCCgucggACCGGCaGCg -3'
miRNA:   3'- -GGGUUGGa-------------GCGGGaca--UGGUCGaCGa -5'
28857 5' -57.6 NC_006146.1 + 128634 0.67 0.793519
Target:  5'- cCCCggUgUCGCCCagcUGaGCCAGCUccucGCg -3'
miRNA:   3'- -GGGuuGgAGCGGG---ACaUGGUCGA----CGa -5'
28857 5' -57.6 NC_006146.1 + 59545 0.68 0.783611
Target:  5'- uCCCAGuuUgUCGCCCUGaUGCCcaccucgGGUUGCg -3'
miRNA:   3'- -GGGUU--GgAGCGGGAC-AUGG-------UCGACGa -5'
28857 5' -57.6 NC_006146.1 + 160190 0.68 0.775385
Target:  5'- gCCCAGauuauCCUCGCCaguCUGUGCUGcCUGCa -3'
miRNA:   3'- -GGGUU-----GGAGCGG---GACAUGGUcGACGa -5'
28857 5' -57.6 NC_006146.1 + 3155 0.68 0.775385
Target:  5'- aCCCGGCCccugCGCCCUG-AUCgAGCaccUGCg -3'
miRNA:   3'- -GGGUUGGa---GCGGGACaUGG-UCG---ACGa -5'
28857 5' -57.6 NC_006146.1 + 64564 0.68 0.756753
Target:  5'- aCCCAAUgCUCGCCCgcagGUAUgGGCaGUg -3'
miRNA:   3'- -GGGUUG-GAGCGGGa---CAUGgUCGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.